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Updated densMAP citation in README
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lmcinnes committed Dec 26, 2022
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Expand Up @@ -72,10 +72,10 @@ Documentation is `available via Read the Docs <https://umap-learn.readthedocs.io

**New: this package now also provides support for densMAP.** The densMAP algorithm augments UMAP
to preserve local density information in addition to the topological structure of the data.
Details of this method are described in the following `paper <https://doi.org/10.1101/2020.05.12.077776>`_:
Details of this method are described in the following `paper <https://doi.org/10.1038/s41587-020-00801-7>`_:

Narayan, A, Berger, B, Cho, H, *Density-Preserving Data Visualization Unveils
Dynamic Patterns of Single-Cell Transcriptomic Variability*, bioRxiv, 2020
Narayan, A, Berger, B, Cho, H, *Assessing Single-Cell Transcriptomic Variability
through Density-Preserving Data Visualization*, Nature Biotechnology, 2021

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Installing
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@article {NBC2020,
author = {Narayan, Ashwin and Berger, Bonnie and Cho, Hyunghoon},
title = {Density-Preserving Data Visualization Unveils Dynamic Patterns of Single-Cell Transcriptomic Variability},
journal = {bioRxiv},
year = {2020},
doi = {10.1101/2020.05.12.077776},
publisher = {Cold Spring Harbor Laboratory},
URL = {https://www.biorxiv.org/content/early/2020/05/14/2020.05.12.077776},
title = {Assessing Single-Cell Transcriptomic Variability through Density-Preserving Data Visualization},
journal = {Nature Biotechnology},
year = {2021},
doi = {10.1038/s41587-020-00801-7},
publisher = {Springer Nature},
URL = {https://doi.org/10.1038/s41587-020-00801-7},
eprint = {https://www.biorxiv.org/content/early/2020/05/14/2020.05.12.077776.full.pdf},
}
If you use the Parametric UMAP algorithm in your work please cite the following reference:

.. code:: bibtex
@article {NBC2020,
@article {SMG2020,
author = {Sainburg, Tim and McInnes, Leland and Gentner, Timothy Q.},
title = {Parametric UMAP: learning embeddings with deep neural networks for representation and semi-supervised learning},
journal = {ArXiv e-prints},
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