Scripts and reference libraries at Kostas lab.
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enveomics.R
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README.md

Enveomics Collection

Scripts and reference libraries at Kostas lab.

Prerequisites

The enveomics collection as a whole has very modest requirements, essentially a *nix system with bash, perl, ruby, and R. Some scripts may require additional libraries, or even external Software, but you'll be forewarned about these requirements in the documentation accompanying each script. If you prefer, you can also use the Graphical User Interface (GUI), that comes with additional tests to let you know if your system is ready to use any given script.

Graphical User Interface (GUI)

The enveomics collection now has a graphical user interface! To learn more, please visit enveomics-gui.

License

The files in this repository are licensed under the terms of the Artistic License 2.0, except when otherwise noted.

You can find a copy of the license in LICENSE.txt or at http://www.perlfoundation.org/artistic_license_2_0.

Documentation

Most scripts in this repository are self-documented. However, more extensive documentation (and some discussion) can be found at the documentation website. Additional documentation for recruitment plots can be found here.

Citation

If you use any of the utilitites in the Enveomics Collection in your research please cite:

Rodriguez-R LM & Konstantinidis KT (2016). The enveomics collection: a toolbox for specialized analyses of microbial genomes and metagenomes. PeerJ Preprints 4:e1900v1.