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28 Open 24 Closed
28 Open 24 Closed
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Issues list

Please add the option to use clustering in colData
#56 opened Dec 19, 2023 by purisuto
2
Fixed the calcCounts and calcMedians Functions and Added Option to Choose Which Clustering Is Used
#55 opened Nov 3, 2023 by LukaTandaric
1
How does diffcyt calculate logFC?
#54 opened Oct 24, 2023 by LukaTandaric
Possible bugfix for LMM fit outputting NAs for all comparisons
#53 opened Sep 25, 2023 by lmweber
2
diffCyt and edgeR return different results
#51 opened Jul 21, 2023 by LazDaria
Diffcyt for two different columns
#49 opened Jun 19, 2023 by shanh1
1
Sorting x-axis in Heatmap
#48 opened May 25, 2023 by Almr95
Association with subject-level continuous phenotypes
#46 opened Dec 13, 2022 by hruffieux
Create design & contrast matrix for differential state analysis
#45 opened Sep 19, 2022 by Stein-ErikG
diffcyt differential expression model with patient_id as random effect only returns NA p values
#43 opened Jul 26, 2022 by singlecellfan
design & constrast matrix
#41 opened May 27, 2022 by cr2106
4
Error in SummarizedExperiment: the rownames and colnames of the supplied assay(s) must be NULL or identical to those of the SummarizedExperiment object (or derivative) to construct
#39 opened May 23, 2022 by igordot
DA for multiple treatments
#37 opened Feb 9, 2022 by MayaCyTOFnewbie
1
NA's after DA-GLMM
#32 opened Jun 11, 2021 by yghosheh
1
low p values when using testDA_GLMM().. lme4 too sensitive to weights?
#31 opened Mar 9, 2021 by florian-bach
createContrast output for comparing multiple levels
#30 opened Feb 1, 2021 by MartijnVNL
Input for createContrast()
#29 opened Jan 18, 2021 by JudithBernett
2
#N/A in expression markers values
#28 opened Jan 4, 2021 by algebio
1
diffcyt for longitudinal data
#27 opened Dec 25, 2020 by antoine4ucsd
Issue running DA analysis
#26 opened Nov 17, 2020 by carl-coyle
1
Model is nearly unidentifiable: very large eigenvalue
#25 opened Nov 10, 2020 by algebio
5
Direction of comparison between the disease group and the reference group
#23 opened Sep 18, 2020 by tammyyyx
topTable function: show_logFC argument doesn't work
#22 opened Sep 16, 2020 by jdhogan
3
Error plotting heatmap
#21 opened Aug 31, 2020 by tammyyyx
3
markers_to_test = what?
#20 opened Aug 24, 2020 by amerji93
5
ProTip! no:milestone will show everything without a milestone.