roumagnac2018_figs

Workflow

*.data are produced from mpileup files using treatmpileup.py

*.svg are produced with script makefigure_cov_sim.R

R packages: tidyverse, zoo

Name		Name	Last commit message	Last commit date
Latest commit History 6 Commits
Brut_results.eps		Brut_results.eps
Brut_results.svg		Brut_results.svg
Coverage.eps		Coverage.eps
Coverage.svg		Coverage.svg
Coverage_and_Similarity.eps		Coverage_and_Similarity.eps
Coverage_and_Similarity.svg		Coverage_and_Similarity.svg
Coverage_distribution.svg		Coverage_distribution.svg
Density_of_similarity.eps		Density_of_similarity.eps
Density_of_similarity.svg		Density_of_similarity.svg
Figures_cov_and_sim.eps		Figures_cov_and_sim.eps
Figures_cov_and_sim.svg		Figures_cov_and_sim.svg
Final.data		Final.data
README.md		README.md
Rplots.ps		Rplots.ps
illumina.data		illumina.data
illumina.mpilup		illumina.mpilup
makefigure_cov_sim.R		makefigure_cov_sim.R
minion.data		minion.data
minion.mpileup		minion.mpileup
plot.eps		plot.eps
similarity_sliding10.eps		similarity_sliding10.eps
similarity_sliding10.svg		similarity_sliding10.svg
similarity_sliding100.eps		similarity_sliding100.eps
similarity_sliding100.svg		similarity_sliding100.svg
similarity_sliding50.eps		similarity_sliding50.eps
similarity_sliding50.svg		similarity_sliding50.svg
treatmpilup.py		treatmpilup.py