Error with BINDetect static plot, AttributeError: 'FancyArrowPatch' object has no property 'add_objects'

[Freeda2023]

Hello,
I'm trying to run BINDetect and in the step of static plot, I get the error of:
2024-06-17 18:21:49 (8246) [INFO] - cntrl / KO (static plot) `

Traceback (most recent call last): File "/home/farzaneh/miniconda3/bin/TOBIAS", line 11, in sys.exit(main()) File "/home/farzaneh/miniconda3/lib/python3.9/site-packages/tobias/TOBIAS.py", line 162, in main args.func(args) File "/home/farzaneh/miniconda3/lib/python3.9/site-packages/tobias/tools/bindetect.py", line 819, in run_bindetect fig = plot_bindetect(motif_list, clustering, [cond1, cond2], args) File "/home/farzaneh/miniconda3/lib/python3.9/site-packages/tobias/tools/bindetect_functions.py", line 773, in plot_bindetect adjust_text(txts, ax=ax1, add_objects=[l], text_from_points=True, arrowprops=dict(arrowstyle='-', color='black', lw=0.5)) #, expand_text=(0.1,1.2), expand_objects=(0.1,0.1)) File "/home/farzaneh/miniconda3/lib/python3.9/site-packages/adjustText/init.py", line 635, in adjust_text arrowpatch = FancyArrowPatch( File "/home/farzaneh/miniconda3/lib/python3.9/site-packages/matplotlib/_api/deprecation.py", line 386, in wrapper return func(*inner_args, **inner_kwargs) File "/home/farzaneh/miniconda3/lib/python3.9/site-packages/matplotlib/patches.py", line 4241, in init super().init(**kwargs) File "/home/farzaneh/miniconda3/lib/python3.9/site-packages/matplotlib/patches.py", line 113, in init self.update(kwargs) File "/home/farzaneh/miniconda3/lib/python3.9/site-packages/matplotlib/artist.py", line 1064, in update raise AttributeError(f"{type(self).name!r} object " AttributeError: 'FancyArrowPatch' object has no property 'add_objects'

`
How can I fix this issue? I changed my matplotlib per its request but the issue is still here.
Thanks

[hschult]

Hello @Freeda2023,

the error comes from the adjustText package because they changed the name of one of their parameters. We have already fixed this in the #270 pull request. If you install the current version from our dev branch, it should work. You can do this e.g. with pip install git+https://github.com/loosolab/TOBIAS@dev.

However, if the error persists please don't hesitate to reopen the issue.

[Freeda2023]

I installed successfully the dev version but I'm not sure if my code runs it through "dev" version or not since I still get the same error. TOBIAS --version returns 0.16.2-b.

[hschult]

0.16.2-b is the correct version your error may have a different reason. However, I need more information to help you. Would you kindly provide your BINDetect call or even better a small reproducible example? To ensure this is not related to your data you can also try to run our BINDetect examples.

[github-actions]

No activity for at least 30 days. Marking issue as stale. Stale issues are closed after one week.