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NAMESPACE
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NAMESPACE
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# Generated by roxygen2: do not edit by hand
export("%>%")
export("adapter<-")
export("bcbio<-")
export(adapter)
export(bcbSmallCluster)
export(bcbSmallDownload)
export(bcbSmallMicro)
export(bcbSmallPCA)
export(bcbSmallSize)
export(bcbSmallSizeDist)
export(bcbio)
export(cluster)
export(colData)
export(experiments)
export(isomir)
export(loadSmallRnaRun)
export(metadata)
export(metrics)
export(mirna)
export(rowData)
export(trna)
exportClasses(bcbioSmallRnaDataSet)
exportMethods("adapter<-")
exportMethods("bcbio<-")
exportMethods(adapter)
exportMethods(bcbio)
exportMethods(cluster)
exportMethods(isomir)
exportMethods(metrics)
exportMethods(mirna)
exportMethods(trna)
import(Biobase)
import(BiocGenerics)
import(DESeq2)
import(MultiAssayExperiment)
import(S4Vectors)
import(SummarizedExperiment)
import(isomiRs)
importFrom(ComplexHeatmap,Heatmap)
importFrom(ComplexHeatmap,HeatmapAnnotation)
importFrom(ComplexHeatmap,draw)
importFrom(DEGreport,degCovariates)
importFrom(DEGreport,degPCA)
importFrom(DEGreport,degPatterns)
importFrom(DEGreport,degQC)
importFrom(RColorBrewer,brewer.pal)
importFrom(circlize,colorRamp2)
importFrom(cowplot,draw_plot)
importFrom(cowplot,ggdraw)
importFrom(cowplot,plot_grid)
importFrom(dplyr,"%>%")
importFrom(dplyr,arrange)
importFrom(dplyr,bind_cols)
importFrom(dplyr,bind_rows)
importFrom(dplyr,enquo)
importFrom(dplyr,filter)
importFrom(dplyr,group_by)
importFrom(dplyr,inner_join)
importFrom(dplyr,left_join)
importFrom(dplyr,mutate)
importFrom(dplyr,mutate_all)
importFrom(dplyr,mutate_if)
importFrom(dplyr,right_join)
importFrom(dplyr,select)
importFrom(dplyr,summarise)
importFrom(dplyr,ungroup)
importFrom(ggplot2,aes_string)
importFrom(ggplot2,annotation_logticks)
importFrom(ggplot2,coord_fixed)
importFrom(ggplot2,coord_flip)
importFrom(ggplot2,coord_trans)
importFrom(ggplot2,element_blank)
importFrom(ggplot2,element_text)
importFrom(ggplot2,expand_limits)
importFrom(ggplot2,facet_wrap)
importFrom(ggplot2,geom_bar)
importFrom(ggplot2,geom_boxplot)
importFrom(ggplot2,geom_density)
importFrom(ggplot2,geom_hline)
importFrom(ggplot2,geom_jitter)
importFrom(ggplot2,geom_line)
importFrom(ggplot2,geom_point)
importFrom(ggplot2,geom_polygon)
importFrom(ggplot2,geom_ribbon)
importFrom(ggplot2,geom_smooth)
importFrom(ggplot2,geom_text)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,ggtitle)
importFrom(ggplot2,guides)
importFrom(ggplot2,labs)
importFrom(ggplot2,scale_color_manual)
importFrom(ggplot2,scale_fill_brewer)
importFrom(ggplot2,scale_x_continuous)
importFrom(ggplot2,scale_x_log10)
importFrom(ggplot2,scale_y_log10)
importFrom(ggplot2,theme)
importFrom(ggplot2,xlab)
importFrom(ggplot2,xlim)
importFrom(ggplot2,ylab)
importFrom(ggplot2,ylim)
importFrom(ggrepel,geom_text_repel)
importFrom(isomiRs,IsomirDataSeqFromFiles)
importFrom(janitor,clean_names)
importFrom(janitor,remove_empty)
importFrom(limma,voom)
importFrom(magrittr,"%>%")
importFrom(methods,"slot<-")
importFrom(methods,as)
importFrom(methods,is)
importFrom(methods,new)
importFrom(methods,slot)
importFrom(methods,validObject)
importFrom(purrr,set_names)
importFrom(readr,read_csv)
importFrom(readr,read_delim)
importFrom(readr,read_lines)
importFrom(readr,read_tsv)
importFrom(reshape,melt)
importFrom(rlang,dots_values)
importFrom(rlang,sym)
importFrom(stats,formula)
importFrom(stringr,str_detect)
importFrom(stringr,str_match)
importFrom(stringr,str_replace_all)
importFrom(stringr,str_split)
importFrom(tibble,column_to_rownames)
importFrom(tidyr,gather)
importFrom(tidyr,separate)
importFrom(utils,capture.output)
importFrom(utils,download.file)
importFrom(utils,read.csv)
importFrom(utils,read.table)
importFrom(yaml,yaml.load_file)