GitHub - lrasmus/FHIR-Genomics

Reference API server of SMART Genomics

How to use it

Change the application settings in config.py (currently the server supports SQLite3 and PostgreSQL, MySQL is however not supported because SQLAlchemy currently fails to generate correct query on complex scenario. Helps on adding support fo MySQL will be welcomed).
Optional: load your version of FHIR spec with the script load_spec.py, which will update fhir_spec.py.
Setup database and load sample data with

# note that this will also clear the database
$ python fhir_genomics.py reload

$ python fhir_genomics.py

$ gunicorn server:app

Name		Name	Last commit message	Last commit date
Latest commit History 56 Commits
examples		examples
static		static
templates		templates
.gitignore		.gitignore
README.md		README.md
api.py		api.py
database.py		database.py
example_loader.py		example_loader.py
fhir_api.py		fhir_api.py
fhir_genomics.py		fhir_genomics.py
fhir_parser.py		fhir_parser.py
fhir_spec.py		fhir_spec.py
fhir_util.py		fhir_util.py
indexer.py		indexer.py
load_spec.py		load_spec.py
models.py		models.py
oauth.py		oauth.py
query_builder.py		query_builder.py
requirements.txt		requirements.txt
sequence.py		sequence.py
server.py		server.py
ui.py		ui.py
util.py		util.py