Name		Name	Last commit message	Last commit date
Latest commit History 36 Commits
README.md		README.md
expansin-locusFigure.R		expansin-locusFigure.R
expansin-prottest.aln		expansin-prottest.aln
expansin.annotations.R.txt		expansin.annotations.R.txt
expansin.fasta		expansin.fasta
expansin.final.aln		expansin.final.aln
expansin.final.nwk		expansin.final.nwk
expansin.tree.R		expansin.tree.R
gh5.R		gh5.R
gh5.annotations.R.txt		gh5.annotations.R.txt
gh5.fasta		gh5.fasta
gh5.final.aln		gh5.final.aln
gh5.final.nwk		gh5.final.nwk
gh5.prottest.txt		gh5.prottest.txt

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Descriptions of files

Original, unaligned fasta files with BLASTP results and full headers

expansin.fasta

gh5.fasta

Aligned and trimmed sequences

expansin.final.aln

gh5.final.aln

Phylogenetic tree files; output from RAxML summarized with sumtrees.py

expansin.final.nwk

gh5.final.nwk

Plotting Figure 1a genomic context of Et-exlx-gh5 locus

expansin-locusFigure.R

Plotting gh5 and expansin trees using ggtree

expansin.tree.R

gh5.R

Annotation files for plotting expansin and gh5 phylogenetic trees

expansin.annotations.R.txt

gh5.annotations.R.txt

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