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💭
coding, coding, coding
💭
coding, coding, coding
175 followers · 82 following

Achievements

Achievement: Starstruckx2Achievement: Pull Sharkx3Achievement: Pair ExtraordinaireAchievement: QuickdrawAchievement: YOLOAchievement: Arctic Code Vault Contributor
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Achievements

Achievement: Starstruckx2Achievement: Pull Sharkx3Achievement: Pair ExtraordinaireAchievement: QuickdrawAchievement: YOLOAchievement: Arctic Code Vault Contributor
BetaSend feedback

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@ncezid-biome
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lskatz/README.md

Hi there 👋

I am a bioinformatician in the Enteric Diseases Laboratory Branch at CDC. My repos include those for work and those for outside of work.

  • I speak 🐫 perl, ⚙️ rust, and 🐬 SQL
  • I pretend to speak 🙄 R and 🐍 Python.
  • 😵 In my past lives, I used to code PHP, HTML, CSS, JavaScript, and even some C.

I have worked on some perl modules including Bio::Kmer but also more complete packages such as Mashtree and Lyve-SET. I have more in my repos and would be glad to collaborate with you!

For more information

Pinned

  1. mashtree mashtree Public

    🌳 Create a tree using Mash distances

    Perl 136 20

  2. lyve-SET lyve-SET Public

    💃 🌴 LYVE-SET, a method of using hqSNPs to create a phylogeny, especially for outbreak investigations

    Perl 24 18

  3. SneakerNet SneakerNet Public

    🐾 QA/QC pipeline for a MiSeq/HiSeq/Ion Torrent/assembly-only run

    Perl 11 4

  4. fasten fasten Public

    👷 Fasten toolkit, for streaming operations on fastq files

    Rust 75 7

  5. Kalamari Kalamari Public

    🐙 A curated database of completed assemblies with taxonomy IDs

    Perl 38 3

  6. tongzhouxu/mashpit tongzhouxu/mashpit Public

    📝 Sketch-based surveillance platform

    Python 8 3