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DM-40514: Integrate Spectractor speedups #45

Merged
merged 147 commits into from Sep 13, 2023
Merged

DM-40514: Integrate Spectractor speedups #45

merged 147 commits into from Sep 13, 2023

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mfisherlevine
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Jérémy Neveu added 30 commits May 22, 2023 19:53
std to nanstd for plot_fit
2c273b6
add with_line_search argument in run_minimisation_sigma_clipping
2985b5b
use new auxtel throughout from 2023-01-19 data
c7de0b6
new OG550 throughput from 2023-01 data
e469644
add with_adr
e54a468
DEBUG: update fit params in workspace
f1a127d
add verbose
cc47739
working fit_multispectra
0142f93
cleaning
d98e494
add test multispectra
437ff62
swith normed to density
2357fb7
swith normed to density
b0cd4ef
clean jacobian
4412d19
test regularisation
d4a8555
working code without rebinning but fit does not reproduce input simul…
4629314 
…ations
cleaning
0274a50
print new parameters in gradient descent
13d575b
LOG10A_T in header
1a4febb
add angstrom_exponent fit; adjust epsilons
ed10982
add angstrom_exponent fit
a93ad34
add default angstrom exponent
70f6c7b
use sparse_mkl for matrix multiplication
460ef24
faster extraction: calibrate_specturm use grid_search only at first call
48e71e2
small optimisation of detect_lines
d618e92
use sparse_dot_mkl for gram matrices
07fb28a
use mask boundaries to speed up build_psf_cube
6f21804
speed-up psf computation
b43bab5
add sparse_dot_mkl
648855a
legendre absicsse rescaling outside multigauss_and_bgd function; fast…
8c506e9 
…er detect_lines()
legendre absicsse rescaling outside multigauss_and_bgd function; fast…
4baa746 
…er detect_lines()
Jérémy Neveu and others added 28 commits August 31, 2023 14:39
decrease constraints in doctest for fit_psf
f597b32
coverage for evaluate_moffat1d_jacobian
5aa6b5e
add doctest for build_sparse_dM
75876e7
@jeremyneveu
Merge branch 'master' into fitmultispectra
f539818
don't cover evaluate_moffat1d_jacobian and others because of numba
0459dc0
debug initialization of self.mask
1f2a4f7
add absolute value before sqrt() for self.amplitude_params_err
7f0a324
convert M_W_M toarray()
4371928
include self.W sparse cases; add doctests
90bab30
1D case for build_psf_cube and build_sparse_M methods
5e5678a
remove raise ValueError if Nx != profile_params.shape[0] in build_psf…
15a3912 
…_cube for full_image=True simulations
Fusion of the 1D and 2D mode in ChromaticPSF evaluation. Fusion of th…
18f4f93 
…e ChromaticPSFFitworkspace classes and use of sparse matrices (big commit)
type some sparse matrices as diagonal
76b40a8
repair levenberg-marquat method
7d1581f
quick mask for psf1d first fit
8f13641
update to 2.7
704db0d
cleaning
2ef94e2
enable line_search if final cost > 1.01 * initial cost
006f760
enable line_search if final cost > (1 + 10 * ftol) * initial cost
ac1efa0
update test spectrum to version 2.7
590e8e8
include sparse case in prepare_weight_matrix
ee882e1
more robust inversion of cov matrix
be2efc4
more robust inversion of cov matrix
1babccc
check bounds in gradient_descent() earlier
1266d06
@jeremyneveu
Merge pull request LSSTDESC#130 from LSSTDESC/fitmultispectra
4dfb776 
Fit multispectra
merge with master after PR#130
e8aed5b
swicth to version 3.0
feeee75
@jeremyneveu
Merge pull request LSSTDESC#132 from LSSTDESC/psf_jacobian
5795091 
Psf jacobian
@mfisherlevine mfisherlevine merged commit 537c14d into lsst-dev Sep 13, 2023
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@czwa czwa czwa approved these changes

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@mfisherlevine @czwa @jeremyneveu