DM-14273: Add ap_verify to lsst_distrib

.travis.yml

@@ -0,0 +1,9 @@
+sudo: false
+language: python
+matrix:
+  include:
+    - python: '3.6'
+      install:
+        - 'pip install flake8'
+      script:
+        - flake8

COPYRIGHT

@@ -0,0 +1 @@
+Copyright 2017-2018 University of Washington

README.rst

@@ -0,0 +1,8 @@
+##############
+ap_association
+##############
+
+``ap_association`` is a package in the `LSST Science Pipelines <https://pipelines.lsst.io>`_.
+
+This package is a repository for holding code related to Alert Production difference source association.
+Its main class is a task, ``AssociationTask``, that performs source association given a repository of difference images and catalogs and a database of previous associations.

SConstruct

@@ -1,3 +1,3 @@
 # -*- python -*-
 from lsst.sconsUtils import scripts
-scripts.BasicSConstruct("ap_association")
+scripts.BasicSConstruct("ap_association", disableCc=True)

python/lsst/ap/association/__init__.py

@@ -1,10 +1,10 @@
+# This file is part of ap_association.
 #
-# LSST Data Management System
-#
-# Copyright 2008-2017  AURA/LSST.
-#
-# This product includes software developed by the
-# LSST Project (http://www.lsst.org/).
+# Developed for the LSST Data Management System.
+# This product includes software developed by the LSST Project
+# (https://www.lsst.org).
+# See the COPYRIGHT file at the top-level directory of this distribution
+# for details of code ownership.
 #
 # This program is free software: you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by
@@ -16,10 +16,8 @@
 # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 # GNU General Public License for more details.
 #
-# You should have received a copy of the LSST License Statement and
-# the GNU General Public License along with this program.  If not,
-# see <https://www.lsstcorp.org/LegalNotices/>.
-#
+# You should have received a copy of the GNU General Public License
+# along with this program.  If not, see <https://www.gnu.org/licenses/>.
 
 from __future__ import absolute_import, division, print_function
 

python/lsst/ap/association/afwUtils.py

@@ -1,9 +1,10 @@
+# This file is part of ap_association.
 #
-# LSST Data Management System
-# Copyright 2017 LSST/AURA.
-#
-# This product includes software developed by the
-# LSST Project (http://www.lsst.org/).
+# Developed for the LSST Data Management System.
+# This product includes software developed by the LSST Project
+# (https://www.lsst.org).
+# See the COPYRIGHT file at the top-level directory of this distribution
+# for details of code ownership.
 #
 # This program is free software: you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by
@@ -15,10 +16,9 @@
 # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 # GNU General Public License for more details.
 #
-# You should have received a copy of the LSST License Statement and
-# the GNU General Public License along with this program.  If not,
-# see <http://www.lsstcorp.org/LegalNotices/>.
-#
+# You should have received a copy of the GNU General Public License
+# along with this program.  If not, see <https://www.gnu.org/licenses/>.
+
 """Defines afw schemas and conversions for use in ap_association tasks.
 
 Until a more finalized interface between the prompt products database (PPD) can

python/lsst/ap/association/assoc_db_sqlite.py

@@ -1,9 +1,10 @@
+# This file is part of ap_association.
 #
-# LSST Data Management System
-# Copyright 2017 LSST/AURA.
-#
-# This product includes software developed by the
-# LSST Project (http://www.lsst.org/).
+# Developed for the LSST Data Management System.
+# This product includes software developed by the LSST Project
+# (https://www.lsst.org).
+# See the COPYRIGHT file at the top-level directory of this distribution
+# for details of code ownership.
 #
 # This program is free software: you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by
@@ -15,10 +16,8 @@
 # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 # GNU General Public License for more details.
 #
-# You should have received a copy of the LSST License Statement and
-# the GNU General Public License along with this program.  If not,
-# see <http://www.lsstcorp.org/LegalNotices/>.
-#
+# You should have received a copy of the GNU General Public License
+# along with this program.  If not, see <https://www.gnu.org/licenses/>.
 
 """Simple sqlite3 interface for storing and retrieving DIAObjects and
 DIASources. This class is mainly for testing purposes in the context of

python/lsst/ap/association/association.py

@@ -1,9 +1,10 @@
+# This file is part of ap_association.
 #
-# LSST Data Management System
-# Copyright 2017 LSST/AURA.
-#
-# This product includes software developed by the
-# LSST Project (http://www.lsst.org/).
+# Developed for the LSST Data Management System.
+# This product includes software developed by the LSST Project
+# (https://www.lsst.org).
+# See the COPYRIGHT file at the top-level directory of this distribution
+# for details of code ownership.
 #
 # This program is free software: you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by
@@ -15,10 +16,8 @@
 # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 # GNU General Public License for more details.
 #
-# You should have received a copy of the LSST License Statement and
-# the GNU General Public License along with this program.  If not,
-# see <http://www.lsstcorp.org/LegalNotices/>.
-#
+# You should have received a copy of the GNU General Public License
+# along with this program.  If not, see <https://www.gnu.org/licenses/>.
 
 """A simple implementation of source association task for ap_verify.
 """

python/lsst/ap/association/l1dbproto.py

@@ -1,9 +1,10 @@
+# This file is part of ap_association.
 #
-# LSST Data Management System
-# Copyright 2017 LSST/AURA.
-#
-# This product includes software developed by the
-# LSST Project (http://www.lsst.org/).
+# Developed for the LSST Data Management System.
+# This product includes software developed by the LSST Project
+# (https://www.lsst.org).
+# See the COPYRIGHT file at the top-level directory of this distribution
+# for details of code ownership.
 #
 # This program is free software: you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by
@@ -15,10 +16,8 @@
 # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 # GNU General Public License for more details.
 #
-# You should have received a copy of the LSST License Statement and
-# the GNU General Public License along with this program.  If not,
-# see <http://www.lsstcorp.org/LegalNotices/>.
-#
+# You should have received a copy of the GNU General Public License
+# along with this program.  If not, see <https://www.gnu.org/licenses/>.
 
 """Simple sqlite3 interface for storing and retrieving DIAObjects and
 DIASources. This class is mainly for testing purposes in the context of

setup.cfg

@@ -1,7 +1,13 @@
 [flake8]
 max-line-length = 110
 ignore = E133, E226, E228, N802, N803, N806
-exclude = __init__.py, cfg/l1db-ap-pipe-sqlite.py
+exclude =
+  bin,
+  doc,
+  **/*/__init__.py,
+  **/*/version.py,
+  tests/.tests,
+  cfg/l1db-ap-pipe-sqlite.py
 
 [tool:pytest]
 addopts = --flake8

tests/test_association_db_sqlite.py

@@ -1,9 +1,10 @@
+# This file is part of ap_association.
 #
-# LSST Data Management System
-# Copyright 2017 LSST/AURA.
-#
-# This product includes software developed by the
-# LSST Project (http://www.lsst.org/).
+# Developed for the LSST Data Management System.
+# This product includes software developed by the LSST Project
+# (https://www.lsst.org).
+# See the COPYRIGHT file at the top-level directory of this distribution
+# for details of code ownership.
 #
 # This program is free software: you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by
@@ -15,10 +16,8 @@
 # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 # GNU General Public License for more details.
 #
-# You should have received a copy of the LSST License Statement and
-# the GNU General Public License along with this program.  If not,
-# see <http://www.lsstcorp.org/LegalNotices/>.
-#
+# You should have received a copy of the GNU General Public License
+# along with this program.  If not, see <https://www.gnu.org/licenses/>.
 
 from __future__ import absolute_import, division, print_function
 

tests/test_association_task.py

@@ -1,9 +1,10 @@
+# This file is part of ap_association.
 #
-# LSST Data Management System
-# Copyright 2017 LSST/AURA.
-#
-# This product includes software developed by the
-# LSST Project (http://www.lsst.org/).
+# Developed for the LSST Data Management System.
+# This product includes software developed by the LSST Project
+# (https://www.lsst.org).
+# See the COPYRIGHT file at the top-level directory of this distribution
+# for details of code ownership.
 #
 # This program is free software: you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by
@@ -15,10 +16,8 @@
 # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 # GNU General Public License for more details.
 #
-# You should have received a copy of the LSST License Statement and
-# the GNU General Public License along with this program.  If not,
-# see <http://www.lsstcorp.org/LegalNotices/>.
-#
+# You should have received a copy of the GNU General Public License
+# along with this program.  If not, see <https://www.gnu.org/licenses/>.
 
 from __future__ import absolute_import, division, print_function
 

tests/test_l1dbproto.py

@@ -1,9 +1,10 @@
+# This file is part of ap_association.
 #
-# LSST Data Management System
-# Copyright 2017 LSST/AURA.
-#
-# This product includes software developed by the
-# LSST Project (http://www.lsst.org/).
+# Developed for the LSST Data Management System.
+# This product includes software developed by the LSST Project
+# (https://www.lsst.org).
+# See the COPYRIGHT file at the top-level directory of this distribution
+# for details of code ownership.
 #
 # This program is free software: you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by
@@ -15,10 +16,8 @@
 # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 # GNU General Public License for more details.
 #
-# You should have received a copy of the LSST License Statement and
-# the GNU General Public License along with this program.  If not,
-# see <http://www.lsstcorp.org/LegalNotices/>.
-#
+# You should have received a copy of the GNU General Public License
+# along with this program.  If not, see <https://www.gnu.org/licenses/>.
 
 from __future__ import absolute_import, division, print_function
 

ups/ap_association.cfg

@@ -8,10 +8,6 @@ import lsst.sconsUtils
 # Otherwise, the rules for which packages to list here are the same as those for
 # table files.
 dependencies = {
-    "required": ["utils", "ndarray"],
-    "buildRequired": ["ndarray"],
-    "optional": [],
-    "buildOptional": [],
 }
 
 # For packages that build a C++ library and a Python module, the below should be sufficient.

ups/ap_association.table

@@ -18,7 +18,4 @@ setupRequired(python_future)
 # The following is boilerplate for all packages.
 # See Tech Note DMTN-001 for details on LSST_LIBRARY_PATH
 # Pure-Python packages only need the last line.
-envPrepend(LD_LIBRARY_PATH, ${PRODUCT_DIR}/lib)
-envPrepend(DYLD_LIBRARY_PATH, ${PRODUCT_DIR}/lib)
-envPrepend(LSST_LIBRARY_PATH, ${PRODUCT_DIR}/lib)
 envPrepend(PYTHONPATH, ${PRODUCT_DIR}/python)