Add shims for Gen2 APIs with Gen3 implementations.

python/lsst/pipe/base/shims.py

@@ -0,0 +1,320 @@
+# This file is part of pipe_base.
+#
+# Developed for the LSST Data Management System.
+# This product includes software developed by the LSST Project
+# (http://www.lsst.org).
+# See the COPYRIGHT file at the top-level directory of this distribution
+# for details of code ownership.
+#
+# This program is free software: you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation, either version 3 of the License, or
+# (at your option) any later version.
+#
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+# GNU General Public License for more details.
+#
+# You should have received a copy of the GNU General Public License
+# along with this program.  If not, see <http://www.gnu.org/licenses/>.
+
+"""Shim classes that provide (limited) Gen2 Butler interfaces to Gen3
+data repositories.
+
+All of the classes here still operate on Gen3 data IDs - the shim layer
+essentially assumes that Gen2 Tasks treat the data ID as an opaque blob, which
+is usually (but not always true).  When it isn't, the best approach now is
+probably to use the GENERATION class attribute on the Butler classes to
+special-case code for each generation.
+"""
+
+__all__ = ("ShimButler", "ShimButlerSubset", "ShimDataRef")
+
+from lsst.daf.persistence import NoResults
+from lsst.daf.butler import StorageClassFactory
+
+
+class ShimButler:
+    """A shim for a Gen2 `~lsst.daf.persistence.Butler` with a Gen3
+    `~lsst.daf.butler.Butler` backend.
+
+    Parameters
+    ----------
+    butler3 : `lsst.daf.butler.Butler`
+        Generation 3 Butler instance.
+    """
+
+    GENERATION = 2.5
+    """This is a Generation 2 shim for a Generation3 Butler.
+    """
+
+    def __init__(self, butler3):
+        self._butler3 = butler3
+
+    def _makeDataId(self, dataId=None, **rest):
+        """Construct a full data ID by merging the given arguments with the
+        internal data ID.
+        """
+        fullDataId = dict()
+        if dataId is not None:
+            fullDataId.update(dataId)
+        fullDataId.update(rest)
+        return fullDataId
+
+    def _translateDatasetType(self, datasetType):
+        if "_" in datasetType:
+            if datasetType.endswith("_md"):
+                return f"{datasetType[:-3]}.metadata"
+            for component in StorageClassFactory().getStorageClass("Exposure").components:
+                suffix = f"_{component}"
+                if datasetType.endswith(suffix):
+                    return "{}.{}".format(datasetType[:-len(suffix)], component)
+        return datasetType
+
+    def datasetExists(self, datasetType, dataId=None, write=False, **rest):
+        """Check whether a datataset exists in the repository.
+
+        Parameters
+        ----------
+        datasetType : `str`
+            Name of the Gen2 dataset type.
+        dataId : `dict` or `~lsst.daf.butler.DataId`, optional
+            A Generation 3 data ID that identifies the dataset.
+        write : `bool`
+            This option is provided for compatibility with
+            `lsst.daf.persistence.Butler`, but must be `False`.
+        rest
+            Additional key-value pairs to augment the given data ID.
+
+        Returns
+        -------
+        exists : `bool`
+            `True` if the dataset is present in the repository, `False`
+            otherwise.
+        """
+        if write:
+            raise NotImplementedError("ShimButler cannot implement datasetExists with 'write=True'")
+        datasetType = self._translateDatasetType(datasetType)
+        try:
+            return self._butler3.datasetExists(datasetType, self._makeDataId(dataId, **rest))
+        except LookupError:
+            # Gen3 datasetExists raises if Dataset is not present in Registry;
+            # Gen2 does not distinguish between present in Datastore and
+            # present in Registry.
+            return False
+
+    def get(self, datasetType, dataId=None, immediate=True, **rest):
+        """Retrieve a dataset.
+
+        Parameters
+        ----------
+        datasetType : `str`
+            Name of the Gen2 dataset type.
+        dataId : `dict` or `~lsst.daf.butler.DataId`, optional
+            A Generation 3 data ID that identifies the dataset.
+        immediate : `bool`
+            This option is provided for compatibility with
+            `lsst.daf.persistence.Butler`, but must be `True`.
+        rest
+            Additional key-value pairs to augment the given data ID.
+
+        Returns
+        -------
+        dataset
+            Retrieved object.
+
+        Raises
+        ------
+        `~lsst.daf.persistence.NoResults`
+            Raised if the dataset does not exist.
+        """
+        if not immediate:
+            raise NotImplementedError("ShimButler cannot implement get with 'immediate=False'")
+        datasetType = self._translateDatasetType(datasetType)
+        fullDataId = self._makeDataId(dataId, **rest)
+        if datasetType.endswith("_sub"):
+            import lsst.afw.image
+            datasetType = datasetType[:len("_sub")]
+            parameters = dict(bbox=fullDataId.pop("bbox"))
+            origin = fullDataId.pop("origin", lsst.afw.image.PARENT)
+            parameters["origin"] = origin
+        else:
+            parameters = {}
+        try:
+            return self._butler3.get(datasetType, fullDataId, parameters=parameters)
+        except (FileNotFoundError, LookupError) as err:
+            raise NoResults(str(err), datasetType, fullDataId)
+
+    def put(self, obj, datasetType, dataId=None, doBackup=False, **rest):
+        """Write a dataset.
+
+        Parameters
+        ----------
+        obj
+            Object to write.
+        datasetType : `str`
+            Name of the Gen2 dataset type.
+        dataId : `dict` or `~lsst.daf.butler.DataId`, optional
+            A Generation 3 data ID that identifies the dataset.
+        doBackup : `bool`
+            This option is provided for compatibility with
+            `lsst.daf.persistence.Butler`, but must be `False`.
+        rest
+            Additional key-value pairs to augment the given data ID.
+        """
+        if doBackup:
+            raise NotImplementedError("ShimButler cannot implement put with 'doBackup=True'")
+        datasetType = self._translateDatasetType(datasetType)
+        self._butler3.put(obj, datasetType, self._makeDataId(dataId, **rest))
+
+    def dataRef(self, datasetType, level=None, dataId=None, **rest):
+        """Return a DataRef associated with the given dataset type and data ID.
+
+        Parameters
+        ----------
+        datasetType : `str`
+            Name of the dataset type.
+        dataId : `dict` or `~lsst.daf.butler.DataId`, optional
+            A Generation 3 data ID that identifies the dataset.
+        level
+            This option is provided for compatibility with
+            `lsst.daf.persistence.Butler`, but must be `None`.
+        rest
+            Additional key-value pairs to augment the given data ID.
+        """
+        if level is not None:
+            raise NotImplementedError("ShimButler cannot implement dataRef with 'level != None'")
+        fullDataId = {}
+        if dataId is not None:
+            fullDataId.update(dataId)
+        fullDataId.update(rest)
+        return next(iter(ShimButlerSubset(self, datasetType, [fullDataId])))
+
+
+class ShimButlerSubset:
+    """A shim for a Gen2 `~lsst.daf.persistence.ButlerSubset` with a Gen3
+    `~lsst.daf.butler.Butler` backend.
+
+    Parameters
+    ----------
+    butler : `ShimButler`
+        Butler shim instance.
+    datasetType : `str`
+        Name of the dataset type.
+    dataIds : iterable of `dict` or `~lsst.daf.butler.DataId`
+        Generation 3 data IDs that define the data in this subset.
+    """
+
+    GENERATION = 2.5
+    """This is a Generation 2 shim for a Generation3 Butler.
+    """
+
+    def __init__(self, butler, datasetType, dataIds):
+        self.butler = butler
+        self.datasetType = datasetType
+        self._dataIds = tuple(dataIds)
+
+    def __len__(self):
+        return len(self._dataIds)
+
+    def __iter__(self):
+        for dataId in self._dataIds:
+            yield ShimDataRef(self, dataId)
+
+
+class ShimDataRef:
+    """A shim for a Gen2 `~lsst.daf.persistence.ButlerDataRef` with a Gen3
+    `~lsst.daf.butler.Butler` backend.
+
+    Parameters
+    ----------
+    butlerSubset : `ShimButlerSubset`
+        ButlerSubset shim instance.  Sets the butler and default dataset type
+        used by the Dataref.
+    dataId : `dict` or `~lsst.daf.butler.DataId`
+        Generation 3 data ID associated with this reference.
+    """
+
+    GENERATION = 2.5
+    """This is a Generation 2 shim for a Generation3 Butler.
+    """
+
+    def __init__(self, butlerSubset, dataId):
+        self.butlerSubset = butlerSubset
+        self.dataId = dataId
+
+    def get(self, datasetType=None, **rest):
+        """Retrieve a dataset.
+
+        Parameters
+        ----------
+        datasetType : `str`, optional.
+            Name of the dataset type.  Defaults to the dataset type used to
+            construct the `ShimButlerSubset`.
+        rest
+            Additional arguments forwarded to `ShimButler.get`.
+
+        Returns
+        -------
+        dataset
+            Retrieved object.
+
+        Raises
+        ------
+        `~lsst.daf.persistence.NoResults`
+            Raised if the dataset does not exist.
+        """
+        if datasetType is None:
+            datasetType = self.butlerSubset.datasetType
+        return self.butlerSubset.butler.get(datasetType, self.dataId, **rest)
+
+    def put(self, obj, datasetType=None, doBackup=False, **rest):
+        """Write a dataset.
+
+        Parameters
+        ----------
+        obj
+            Object to write.
+        datasetType : `str`, optional
+            Name of the dataset type.  Defaults to the dataset type used to
+            construct the `ShimButlerSubset`.
+        doBackup : `bool`
+            This option is provided for compatibility with
+            `lsst.daf.persistence.ButlerDataRef`, but must be `False`.
+        rest
+            Additional arguments forwarded to `ShimButler.put`.
+        """
+        if datasetType is None:
+            datasetType = self.butlerSubset.datasetType
+        self.butlerSubset.butler.put(obj, datasetType, self.dataId, doBackup=doBackup, **rest)
+
+    def datasetExists(self, datasetType=None, write=False, **rest):
+        """Check whether a datataset exists in the repository.
+
+        Parameters
+        ----------
+        datasetType : `str`, optional
+            Name of the dataset type.  Defaults to the dataset type used to
+            construct the `ShimButlerSubset`.
+        write : `bool`
+            This option is provided for compatibility with
+            `lsst.daf.persistence.ButlerDataRef`, but must be `False`.
+        rest
+            Additional arguments forwarded to `ShimButler.datasetExists`.
+
+        Returns
+        -------
+        exists : `bool`
+            `True` if the dataset is present in the repository, `False`
+            otherwise.
+        """
+        if datasetType is None:
+            datasetType = self.butlerSubset.datasetType
+        return self.butlerSubset.butler.datasetExists(
+            datasetType, self.dataId, write=write, **rest)
+
+    def getButler(self):
+        """Return the (shim) Butler used by this DataRef.
+        """
+        return self.butlerSubset.butler