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DM-39582: Decrease memory usage and load times when reading graphs #348

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merged 9 commits into from Jul 4, 2023

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natelust
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Checklist

  • ran Jenkins
  • added a release note for user-visible changes to doc/changes

@natelust natelust requested a review from andy-slac June 27, 2023 21:26
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Looks good.

@@ -0,0 +1 @@
Deprecated reconstituteDimensions argument from QuantumNode.from_simple
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Probably removal.md instead of api.md?

Comment on lines 225 to 227
runner = PersistenceContextVars()
graph = runner.run(self.deserializer.constructGraph, nodeSet, _readBytes, universe)
return graph # type: ignore
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I do not entirely understand PersistenceContextVars/context vars, would it be nice if it could work like a regular context manager, e.g.:

with PersistenceContextVars():
   return self.deserializer.constructGraph(nodeSet, _readBytes, universe)

but may be it's not possible?

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I worked on that for a while, and the outcome kept coming out more awkward, and not at all nice like that. I think it is mostly because context vars are more geared toward asyncio, callback programming style.

@natelust natelust force-pushed the tickets/DM-39582 branch 3 times, most recently from 89015ec to 620e96b Compare June 30, 2023 22:33
@natelust natelust changed the title tickets/DM039582 tickets/DM-39582 Jun 30, 2023
@timj timj changed the title tickets/DM-39582 DM-39582: Decrease memory usage and load times when reading graphs Jun 30, 2023
@natelust natelust force-pushed the tickets/DM-39582 branch 2 times, most recently from 8b2305b to 80046aa Compare July 4, 2023 01:00
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codecov bot commented Jul 4, 2023

Codecov Report

Patch coverage: 66.66% and project coverage change: -0.07 ⚠️

Comparison is base (806fb6d) 82.82% compared to head (44f5f6c) 82.75%.

Additional details and impacted files
@@            Coverage Diff             @@
##             main     #348      +/-   ##
==========================================
- Coverage   82.82%   82.75%   -0.07%     
==========================================
  Files          66       66              
  Lines        7242     7237       -5     
  Branches     1410     1291     -119     
==========================================
- Hits         5998     5989       -9     
- Misses        999     1000       +1     
- Partials      245      248       +3     
Impacted Files Coverage Δ
python/lsst/pipe/base/executionButlerBuilder.py 66.21% <0.00%> (ø)
python/lsst/pipe/base/graph/_implDetails.py 44.69% <ø> (ø)
python/lsst/pipe/base/graphBuilder.py 63.68% <ø> (ø)
...ython/lsst/pipe/base/script/transfer_from_graph.py 12.50% <0.00%> (ø)
...ython/lsst/pipe/base/tests/mocks/_pipeline_task.py 34.54% <0.00%> (+0.61%) ⬆️
python/lsst/pipe/base/pipeline.py 66.05% <25.00%> (ø)
python/lsst/pipe/base/connections.py 77.85% <37.50%> (-0.28%) ⬇️
python/lsst/pipe/base/_quantumContext.py 86.39% <60.00%> (ø)
python/lsst/pipe/base/graph/quantumNode.py 88.70% <85.71%> (-0.58%) ⬇️
python/lsst/pipe/base/_instrument.py 84.92% <100.00%> (ø)
... and 5 more

... and 1 file with indirect coverage changes

☔ View full report in Codecov by Sentry.
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Fixing mypy annotations revealed a small bug in adjustQuantum with
dataset type names, this commit also fixes that.
@natelust natelust merged commit 07d78ed into main Jul 4, 2023
8 of 10 checks passed
@natelust natelust deleted the tickets/DM-39582 branch July 4, 2023 13:39
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2 participants