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Add simple training script #74

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Add simple training script #74

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Commits on Apr 22, 2021

  1. add simple transformer

    @superantichrist
    superantichrist committed Apr 22, 2021
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Commits on Apr 26, 2021

  1. Merge remote-tracking branch 'upstream/main' into train-simple

    @superantichrist
    superantichrist committed Apr 26, 2021
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  2. change ignore padding index number 

    threshold to 250
    @superantichrist
    superantichrist committed Apr 26, 2021
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  3. add checkpoint restore routine 

    add optimization scheduler
    @superantichrist
    superantichrist committed Apr 26, 2021
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Commits on May 10, 2021

  1. add positional encoding 

    add parameter for various test
    @superantichrist
    superantichrist committed May 10, 2021
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  2. Merge remote-tracking branch 'upstream/main' into train-simple 

    # Conflicts:
#	alphafold2_pytorch/utils.py
    @superantichrist
    superantichrist committed May 10, 2021
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Commits on May 13, 2021

  1. add best model logic 

    save figure for phi, psi, omega angle
mask applied for prediction output and angle data
    @superantichrist
    superantichrist committed May 13, 2021
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Commits on May 14, 2021

  1. calculate loss only for non masked area 

    simulated annealing for learning rate
    @superantichrist
    superantichrist committed May 14, 2021
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Commits on Jun 1, 2021

  1. apply padding mask correctly

    @superantichrist
    superantichrist committed Jun 1, 2021
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  2. Merge remote-tracking branch 'upstream/main' into train-simple

    @superantichrist
    superantichrist committed Jun 1, 2021
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