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_pkgdown.yml
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/
_pkgdown.yml
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destination: docs
template:
params:
bootswatch: cerulean
reference:
- title: Launch the GUI
desc: Graphical User Interface
contents:
- "run_ntbox"
- title: Setting & getting environmental data
desc: Find an appropiate source of E-data and read it in R.
contents:
- starts_with("get_")
- "rlayers_ntb"
- title: Geographic data
desc: Look for GBIF data (https://www.gbif.org/), curate from spatial duplictes
estimate a bias layer.
contents:
- "searh_gbif_data"
- "occs_history"
- "clean_dup"
- "biaslayer"
- title: Niche space (exploration and filtering)
contents:
- "correlation_finder"
- "ellipsoid_cluster_plot_3d"
- "inEllipsoid"
- "sample_envbg"
- title: Ecological Niche Modeling
desc: Ellispoid modeling functions and MaxEnt calls
contents:
- "cov_center"
- "ellipsoidfit"
- "ellipsoid_selection"
- "maxent_call"
- "swd_format"
- title: SDM performance
desc: Model evaluation and thresholding
contents:
- "bin_model"
- "binomial_test"
- "confu_mat_optim"
- "ellipsoid_omr"
- "omission_rate"
- "pROC"
- title: Extrapolation risk assessment
desc: Tools to explore extrapolation risk in ENM
contents:
- "exdet_univar"
- "exdet_multvar"
- "mop"
- "ntb_mess"
- title: GIS tools
desc: Transform into Principal Componets you E-layers
contents:
- "spca"
- title: Helper functions
desc: Functions that perform calculations inside other functions
contents:
- "nc"
- "plot_out"
- "trapozoid_roc"