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Related Issues: #349
Requested Reviewers: @lukasturcani
Note for Reviewers: If you accept the review request add a 馃憤 to this post
This PR simply replaces examples of
Molecule.write(path)
withstk.Writer().write(molecule, path)
in prominent places that do not affect convenience (e.g. in the EA runs, some places should stay in the original version because of actual convenience and unclear file type expectations).