Image generation from protein structures

This program generates PNG format image file from a single protein structure PDBX/mmCIF format file using Shell script. Program uses here-document code block which redirects stdin into Jmol program.

Program execution

pdbx-draw-secondary [selection statement] [input file] [output file]

or:

pdbx-draw-secondary [-r option] [rotation file] [selection statement] [input file] [output file]

or:

pdbx-draw-secondary [-h (--help) option]

or

pdbx-draw-secondary [-v (--version) option]

Program execution examples

pdbx-draw-secondary '288-317 and *:A and helix' 2C2A.cif 2C2A.png

or:

pdbx-draw-secondary -r rotation.ras '288-317 and *:A and helix' 2C2A.cif 2C2A.png

or:

pdbx-draw-secondary -h

or:

pdbx-draw-secondary -v

More information about this program can be found under specification/specification.txt