We read every piece of feedback, and take your input very seriously.
To see all available qualifiers, see our documentation.
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
Describe the bug
While running octopus (current develop branch) I see the the following error output, and the run then hangs:
[2020-05-15 00:25:44] <INFO> NODE_823_length_10242_cov_14.583669:3363 73.3% 17m 27s 6m 22s [2020-05-15 00:26:01] <INFO> NODE_845_length_10011_cov_40.083551:9574 74.3% 17m 44s 6m 9s [2020-05-15 00:26:10] <EROR> Encountered a problem whilst calling NODE_862_length_9817_cov_44.884908:0-9817(Haplotype::copy unsorted or overlapping regions provided) [2020-05-15 00:27:41] <INFO> NODE_849_length_9968_cov_31.560712:3907 75.3% 19m 24s 6m 23s
octopus keeps on running, but nothing more is written.
Version
$ octopus --version octopus version 0.7.0 (develop ba99b500) Target: x86_64 Linux 2.6.32-642.13.1.el6.x86_64 SIMD extension: SSE2 Compiler: GNU 9.1.1 Boost: 1_73
Command line to run octopus:
$ octopus -R contigs-1k+.fasta -I contigs-1k+.bam -o contigs-1k+.g.vcf.gz --threads 32 --refcall POSITIONAL
NODE862.tar.gz
The text was updated successfully, but these errors were encountered:
Thanks for the bug report. Should be fixed in 2bde043.
Sorry, something went wrong.
Thanks!
dancooke
No branches or pull requests
Describe the bug
While running octopus (current develop branch) I see the the following error output, and the run then hangs:
octopus keeps on running, but nothing more is written.
Version
Command line to run octopus:
NODE862.tar.gz
The text was updated successfully, but these errors were encountered: