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Here, you can find all the bash scripts and R codes used in our paper of hematological malignancies

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All script.sh

All script.sh

 
 

README.md

README.md

 
 

hisat_deseq.R

hisat_deseq.R

 
 

hisat_edgeR.R

hisat_edgeR.R

 
 

hisat_limma.R

hisat_limma.R

 
 

kallisto_deseq2.R

kallisto_deseq2.R

 
 

kallisto_edgeR.R

kallisto_edgeR.R

 
 

kallisto_limma.R

kallisto_limma.R

 
 

salmon_deseq2.R

salmon_deseq2.R

 
 

salmon_edgeR.R

salmon_edgeR.R

 
 

salmon_limma.R

salmon_limma.R

 
 

star_deseq2.R

star_deseq2.R

 
 

star_edgeR.R

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star_limma.R

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RNA-seq analyses pipeline for cancer research

Albert Doughan

Introduction

This tutorial describes in details how to perform differential gene expression analysis in RNA-seq studies. Here we only focused on DESeq2 using count data from HISAT2 aligner.

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Here, you can find all the bash scripts and R codes used in our paper of hematological malignancies

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