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dbGaPCheckup 1.1.0

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@lwheinsberg lwheinsberg released this 29 Sep 11:19
· 3 commits to main since this release
  • added an informative error message when the required VALUES column is missing
  • adjusted values_check to temporarily create dummy names for blank-named columns beyond VALUES to prevent function from dying if column names after VALUES are blank strings
  • corrected minmax_check and integer_check bugs that occurred when SUBJECT_ID was a character vector
  • adjusted misc_format_check to return a WARNING that alerts users if they read in a data set and R automatically fills in column names after VALUES (which is allowed by the package, but not dbGaP itself)
  • adjusted NA_check to correctly capture NA=N/A VALUES
  • corrected bug in type_check that was allowing some non-allowable TYPE entries to pass
  • corrected but in missing_value_check that was flagging some variables even when they had properly encoded NA=N/A VALUES
  • made complete_check more robust to errors by wrapping functions in tryCatch
  • used seealso to link utility functions to relevant check functions