Introduction: Open Repository of Scripts and Resources for Nanopore (R1041 simplex/ R1041 duplex/ R941) and NGS Sequencing of Eight Bacteria.
Quick links:
- The published paper featuring the presented results can be access here.
- The raw data in fastq file is available here.
- The high quality genome references are here.
- The assembled drafts are available are here for Acinetobacter pittii.
- The assembled drafts are available are here for Bacillus cereus.
- The assembled drafts are available are here for Enterococcus faecium.
- The assembled drafts are available are here for Escherichia coli.
- The assembled drafts are available are here for Klebsiella pneumoniae.
- The assembled drafts are available are here for Pseudomonas aeruginosa.
- The assembled drafts are available are here for Salmonella enterica.
- The assembled drafts are available are here for Staphylococcus aureus.
The taxonomy for eight bacteria：
| Kingdom | Phylum | Class | Order | Family | Genes | Species |
|---|---|---|---|---|---|---|
| Bacteria | Proteobacteria | Gammaproteobacteria | Pseudomonadales | Moraxellaceae | Acinetobacter | Acinetobacter pittii |
| Bacteria | Proteobacteria | Gammaproteobacteria | Enterobacterales | Enterobacteriaceae | Escherichia | Escherichia coli |
| Bacteria | Proteobacteria | Gammaproteobacteria | Enterobacterales | Enterobacteriaceae | Klebsiella | Klebsiella pneumoniae |
| Bacteria | Proteobacteria | Gammaproteobacteria | Pseudomonadales | Pseudomonadaceae | Pseudomonas | Pseudomonas aeruginosa |
| Bacteria | Proteobacteria | Gammaproteobacteria | Enterobacterales | Enterobacteriaceae | Salmonella | Salmonella enterica |
| Bacteria | Firmicutes | Bacilli | Bacillales | Bacillaceae | Bacillus | Bacillus cereus |
| Bacteria | Firmicutes | Bacilli | Lactobacillales | Enterococcaceae | Enterococcus | Enterococcus faecium |
| Bacteria | Firmicutes | Bacilli | Bacillales | Staphylococcaceae | Staphylococcus | Staphylococcus aureus |