Benchmarking for ONT data using bacteria samples

Introduction: Open Repository of Scripts and Resources for Nanopore (R1041 simplex/ R1041 duplex/ R941) and NGS Sequencing of Eight Bacteria.

Quick links:

• The published paper featuring the presented results can be access here.
• The raw data in fastq file is available here.
• The high quality genome references are here.
• The assembled drafts are available are here for Acinetobacter pittii.
• The assembled drafts are available are here for Bacillus cereus.
• The assembled drafts are available are here for Enterococcus faecium.
• The assembled drafts are available are here for Escherichia coli.
• The assembled drafts are available are here for Klebsiella pneumoniae.
• The assembled drafts are available are here for Pseudomonas aeruginosa.
• The assembled drafts are available are here for Salmonella enterica.
• The assembled drafts are available are here for Staphylococcus aureus.

The taxonomy for eight bacteria：

Kingdom	Phylum	Class	Order	Family	Genes	Species
Bacteria	Proteobacteria	Gammaproteobacteria	Pseudomonadales	Moraxellaceae	Acinetobacter	Acinetobacter pittii
Bacteria	Proteobacteria	Gammaproteobacteria	Enterobacterales	Enterobacteriaceae	Escherichia	Escherichia coli
Bacteria	Proteobacteria	Gammaproteobacteria	Enterobacterales	Enterobacteriaceae	Klebsiella	Klebsiella pneumoniae
Bacteria	Proteobacteria	Gammaproteobacteria	Pseudomonadales	Pseudomonadaceae	Pseudomonas	Pseudomonas aeruginosa
Bacteria	Proteobacteria	Gammaproteobacteria	Enterobacterales	Enterobacteriaceae	Salmonella	Salmonella enterica
Bacteria	Firmicutes	Bacilli	Bacillales	Bacillaceae	Bacillus	Bacillus cereus
Bacteria	Firmicutes	Bacilli	Lactobacillales	Enterococcaceae	Enterococcus	Enterococcus faecium
Bacteria	Firmicutes	Bacilli	Bacillales	Staphylococcaceae	Staphylococcus	Staphylococcus aureus