OSCC_host_bacteria_interactions

• Pipelines and scripts for the projects that analyzed the interactions between bacteria and host genes

1. RNAseq pipeline

• Scripts to process RNAseq tissue data and cell line data.

2. Methylation pipeline

• Scripts to process Methylation tissue data.

3. Differential expression pipeline

• Pipeline to identify differentially expressed genes.

4. Differential Methylation pipeline

• R scripts to identify differentially methylated regions.

5. 16S data analysis pipeline

• Pipeline to analyze 16S rRNA sequencing data.