Supporting Information for the paper "RNMFMDA:A microbe-disease association identification method based on reliable negative sample selection and logistic matrix factorization with neighborhood regularization"
by Lihong Peng, Ling Shen, Longjie Liao, Guangyi Liu, Liqian Zhou, Frontiers in Microbiology, section Systems Microbiology.
Data is available at HMDAD.
Install python3.* for runing this code. And these packages should be satisified:
- numpy
- scikit-learn
- scipy
To run the model, default 5 fold cross validation and 1 negative sample scale
python main.pyset 5 fold cross validaion to run the model
python main.py --Kfold_num 5set negative sample scale to run the model
python main.py --rn_scale 1