Quality Graphs for aroma affymetrix based normalization in microarray data.

This package contains functions to perform the quality control analysis for microarray data

• densityplot_all : Plot with log2 raw intensities in density plots.
• boxplot_all : Plot with log2 raw intensities in boxplots.
• clusterdend : Plot dendrograms with methods: ward.D2, average and complete and distances: Correlations and euclidean
• makePCA : 3D plot with a principal component analysis (PCA)
• qualityplots : A shortcut to call all the previous plots.
• Heat.make : Function to make heatmaps from a numeric matrix.
• MakeVolcano : Function to make heatmaps from a numeric matrix.