downloading third party packages

[ROZBEH]

When I try to run iepy --download-third-party-data for third party data, I get the following error. Does anybody has any idea what I am doing wrong?

/home/huinfo/Documents/venv/lib/python3.5/site-packages/sklearn/utils/fixes.py:55: DeprecationWarning: inspect.getargspec() is deprecated, use inspect.signature() instead
  if 'order' in inspect.getargspec(np.copy)[0]:
Traceback (most recent call last):
  File "/home/huinfo/Documents/venv/bin/iepy", line 7, in <module>
    from iepy.instantiation.command_line import execute_from_command_line
  File "/home/huinfo/Documents/venv/lib/python3.5/site-packages/iepy/instantiation/command_line.py", line 27, in <module>
    from iepy.preprocess.corenlp import download as download_corenlp
  File "/home/huinfo/Documents/venv/lib/python3.5/site-packages/iepy/preprocess/corenlp.py", line 28, in <module>
    JAVA_VERSION = detect_java_version()
  File "/home/huinfo/Documents/venv/lib/python3.5/site-packages/iepy/preprocess/corenlp.py", line 24, in detect_java_version
    jversion = subprocess.check_output([java_cmd, "-jar", jar], stderr=subprocess.PIPE)
  File "/usr/lib/python3.5/subprocess.py", line 626, in check_output
    **kwargs).stdout
  File "/usr/lib/python3.5/subprocess.py", line 708, in run
    output=stdout, stderr=stderr)
subprocess.CalledProcessError: Command '['/usr/bin/java', '-jar', '/home/huinfo/Documents/venv/lib/python3.5/site-packages/iepy/preprocess/utils/get-java-version.jar']' returned non-zero exit status 255

[jmansilla]

Based on this: subprocess.CalledProcessError: Command '['/usr/bin/java',
'-jar', '/home/huinfo/Documents/venv/lib/python3.5/site-packages/iep
y/preprocess/utils/get-java-version.jar']' returned non-zero exit status 255

Can you try to run
/usr/bin/java/ -jar /home/huinfo/Documents/venv/lib/python3.5/site-packages/
iepy/preprocess/utils/get-java-version.jar
so we can see the output of such problematic subcall?

On Mon, Aug 15, 2016 at 8:09 PM, ROZBEH notifications@github.com wrote:

When I try to run iepy --download-third-party-data for third party data,
I get the following error. Does anybody has any idea what I am doing wrong?

/home/huinfo/Documents/venv/lib/python3.5/site-packages/sklearn/utils/fixes.py:55: DeprecationWarning: inspect.getargspec() is deprecated, use inspect.signature() instead
if 'order' in inspect.getargspec(np.copy)[0]:
Traceback (most recent call last):
File "/home/huinfo/Documents/venv/bin/iepy", line 7, in
from iepy.instantiation.command_line import execute_from_command_line
File "/home/huinfo/Documents/venv/lib/python3.5/site-packages/iepy/instantiation/command_line.py", line 27, in
from iepy.preprocess.corenlp import download as download_corenlp
File "/home/huinfo/Documents/venv/lib/python3.5/site-packages/iepy/preprocess/corenlp.py", line 28, in
JAVA_VERSION = detect_java_version()
File "/home/huinfo/Documents/venv/lib/python3.5/site-packages/iepy/preprocess/corenlp.py", line 24, in detect_java_version
jversion = subprocess.check_output([java_cmd, "-jar", jar], stderr=subprocess.PIPE)
File "/usr/lib/python3.5/subprocess.py", line 626, in check_output
**kwargs).stdout
File "/usr/lib/python3.5/subprocess.py", line 708, in run
output=stdout, stderr=stderr)
subprocess.CalledProcessError: Command '['/usr/bin/java', '-jar', '/home/huinfo/Documents/venv/lib/python3.5/site-packages/iepy/preprocess/utils/get-java-version.jar']' returned non-zero exit status 255

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Javier Mansilla - Developer
www.machinalis.com
Skype: javier_mansilla

[ROZBEH]

Before running the command that you said, terminal was like this:
(venv) huinfo@huinfo-Precision-WorkStation-T7400:~/Documents/venv$
After running it, terminal changed to this:
unknown(venv) huinfo@huinfo-Precision-WorkStation-T7400:~/Documents/venv$

Also when I run the java-version I get the following :

(venv) huinfo@huinfo-Precision-WorkStation-T7400:~/Documents/venv$ java -version
openjdk version "9-internal"
OpenJDK Runtime Environment (build 9-internal+0-2016-04-14-195246.buildd.src)
OpenJDK 64-Bit Server VM (build 9-internal+0-2016-04-14-195246.buildd.src, mixed mode)

[jmansilla]

No output was generated? Weird.

Are you positive that you have a working JVM (java virtual machine)?

I need to get some time to test this properly.

You said that you are now using ubuntu 16.04 with java1.8 right?

On Tue, Aug 16, 2016 at 12:49 PM, ROZBEH notifications@github.com wrote:

Before running the command that you said, terminal was like this:
(venv) huinfo@huinfo-Precision-WorkStation-T7400:/Documents/venv$
After running it, terminal changed to this:
unknown(venv) huinfo@huinfo-Precision-WorkStation-T7400:/Documents/venv$

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Javier Mansilla - Developer
www.machinalis.com
Skype: javier_mansilla

[ROZBEH]

I updated my previous comment. Yeah Ubuntu 16.04 and my java version is on the previous comment that I updated.

[ROZBEH]

Also this might be helpful:

(venv) huinfo@huinfo-Precision-WorkStation-T7400:~/Documents/venv$ file `which java`
/usr/bin/java: symbolic link to /etc/alternatives/java

I get the following after running locate java

/etc/.java
/etc/java-9-openjdk
/etc/.java/.systemPrefs
/etc/.java/.systemPrefs/.system.lock
/etc/.java/.systemPrefs/.systemRootModFile
/etc/alternatives/java
/etc/alternatives/java.1.gz
/etc/apparmor.d/abstractions/ubuntu-browsers.d/java
/etc/java-9-openjdk/accessibility.properties
/etc/java-9-openjdk/jvm-amd64.cfg
/etc/java-9-openjdk/logging.properties
/etc/java-9-openjdk/management
/etc/java-9-openjdk/net.properties
/etc/java-9-openjdk/psfont.properties.ja
/etc/java-9-openjdk/psfontj2d.properties
/etc/java-9-openjdk/security
/etc/java-9-openjdk/sound.properties
/etc/java-9-openjdk/swing.properties
/etc/java-9-openjdk/management/jmxremote.access
/etc/java-9-openjdk/management/management.properties
/etc/java-9-openjdk/security/blacklisted.certs
/etc/java-9-openjdk/security/java.policy
/etc/java-9-openjdk/security/java.security
/etc/java-9-openjdk/security/nss.cfg
/etc/ssl/certs/java
/etc/ssl/certs/java/cacerts
/home/huinfo/Documents/venv/lib/python3.5/site-packages/iepy/preprocess/utils/get-java-version.jar
/usr/bin/java
/usr/lib/jvm/.java-1.9.0-openjdk-amd64.jinfo
/usr/lib/jvm/java-1.9.0-openjdk-amd64
/usr/lib/jvm/java-9-openjdk-amd64
/usr/lib/jvm/java-9-openjdk-amd64/ASSEMBLY_EXCEPTION
/usr/lib/jvm/java-9-openjdk-amd64/THIRD_PARTY_README
/usr/lib/jvm/java-9-openjdk-amd64/bin
/usr/lib/jvm/java-9-openjdk-amd64/docs
/usr/lib/jvm/java-9-openjdk-amd64/jmods
/usr/lib/jvm/java-9-openjdk-amd64/jrt-fs.jar
/usr/lib/jvm/java-9-openjdk-amd64/lib
/usr/lib/jvm/java-9-openjdk-amd64/man
/usr/lib/jvm/java-9-openjdk-amd64/bin/java
/usr/lib/jvm/java-9-openjdk-amd64/bin/jjs
/usr/lib/jvm/java-9-openjdk-amd64/bin/keytool
/usr/lib/jvm/java-9-openjdk-amd64/bin/orbd
/usr/lib/jvm/java-9-openjdk-amd64/bin/pack200
/usr/lib/jvm/java-9-openjdk-amd64/bin/rmid
/usr/lib/jvm/java-9-openjdk-amd64/bin/rmiregistry
/usr/lib/jvm/java-9-openjdk-amd64/bin/servertool
/usr/lib/jvm/java-9-openjdk-amd64/bin/tnameserv
/usr/lib/jvm/java-9-openjdk-amd64/bin/unpack200
/usr/lib/jvm/java-9-openjdk-amd64/jmods/java.activation.jmod
/usr/lib/jvm/java-9-openjdk-amd64/jmods/java.annotations.common.jmod
/usr/lib/jvm/java-9-openjdk-amd64/jmods/java.base.jmod
/usr/lib/jvm/java-9-openjdk-amd64/jmods/java.compact1.jmod
/usr/lib/jvm/java-9-openjdk-amd64/jmods/java.compact2.jmod
/usr/lib/jvm/java-9-openjdk-amd64/jmods/java.compact3.jmod
/usr/lib/jvm/java-9-openjdk-amd64/jmods/java.compiler.jmod
/usr/lib/jvm/java-9-openjdk-amd64/jmods/java.corba.jmod
/usr/lib/jvm/java-9-openjdk-amd64/jmods/java.datatransfer.jmod
/usr/lib/jvm/java-9-openjdk-amd64/jmods/java.desktop.jmod
/usr/lib/jvm/java-9-openjdk-amd64/jmods/java.httpclient.jmod
/usr/lib/jvm/java-9-openjdk-amd64/jmods/java.instrument.jmod
/usr/lib/jvm/java-9-openjdk-amd64/jmods/java.logging.jmod
/usr/lib/jvm/java-9-openjdk-amd64/jmods/java.management.jmod
/usr/lib/jvm/java-9-openjdk-amd64/jmods/java.naming.jmod
/usr/lib/jvm/java-9-openjdk-amd64/jmods/java.prefs.jmod
/usr/lib/jvm/java-9-openjdk-amd64/jmods/java.rmi.jmod
/usr/lib/jvm/java-9-openjdk-amd64/jmods/java.scripting.jmod
/usr/lib/jvm/java-9-openjdk-amd64/jmods/java.se.ee.jmod
/usr/lib/jvm/java-9-openjdk-amd64/jmods/java.se.jmod
/usr/lib/jvm/java-9-openjdk-amd64/jmods/java.security.jgss.jmod
/usr/lib/jvm/java-9-openjdk-amd64/jmods/java.security.sasl.jmod
/usr/lib/jvm/java-9-openjdk-amd64/jmods/java.smartcardio.jmod
/usr/lib/jvm/java-9-openjdk-amd64/jmods/java.sql.jmod
/usr/lib/jvm/java-9-openjdk-amd64/jmods/java.sql.rowset.jmod
/usr/lib/jvm/java-9-openjdk-amd64/jmods/java.transaction.jmod
/usr/lib/jvm/java-9-openjdk-amd64/jmods/java.xml.bind.jmod
/usr/lib/jvm/java-9-openjdk-amd64/jmods/java.xml.crypto.jmod
/usr/lib/jvm/java-9-openjdk-amd64/jmods/java.xml.jmod
/usr/lib/jvm/java-9-openjdk-amd64/jmods/java.xml.ws.jmod
/usr/lib/jvm/java-9-openjdk-amd64/jmods/jdk.accessibility.jmod
/usr/lib/jvm/java-9-openjdk-amd64/jmods/jdk.attach.jmod
/usr/lib/jvm/java-9-openjdk-amd64/jmods/jdk.charsets.jmod
/usr/lib/jvm/java-9-openjdk-amd64/jmods/jdk.compiler.jmod
/usr/lib/jvm/java-9-openjdk-amd64/jmods/jdk.crypto.ec.jmod
/usr/lib/jvm/java-9-openjdk-amd64/jmods/jdk.crypto.pkcs11.jmod
/usr/lib/jvm/java-9-openjdk-amd64/jmods/jdk.dynalink.jmod
/usr/lib/jvm/java-9-openjdk-amd64/jmods/jdk.hotspot.agent.jmod
/usr/lib/jvm/java-9-openjdk-amd64/jmods/jdk.httpserver.jmod
/usr/lib/jvm/java-9-openjdk-amd64/jmods/jdk.internal.le.jmod
/usr/lib/jvm/java-9-openjdk-amd64/jmods/jdk.internal.opt.jmod
/usr/lib/jvm/java-9-openjdk-amd64/jmods/jdk.jartool.jmod
/usr/lib/jvm/java-9-openjdk-amd64/jmods/jdk.javadoc.jmod
/usr/lib/jvm/java-9-openjdk-amd64/jmods/jdk.jcmd.jmod
/usr/lib/jvm/java-9-openjdk-amd64/jmods/jdk.jconsole.jmod
/usr/lib/jvm/java-9-openjdk-amd64/jmods/jdk.jdeps.jmod
/usr/lib/jvm/java-9-openjdk-amd64/jmods/jdk.jdi.jmod
/usr/lib/jvm/java-9-openjdk-amd64/jmods/jdk.jdwp.agent.jmod
/usr/lib/jvm/java-9-openjdk-amd64/jmods/jdk.jlink.jmod
/usr/lib/jvm/java-9-openjdk-amd64/jmods/jdk.jshell.jmod
/usr/lib/jvm/java-9-openjdk-amd64/jmods/jdk.jsobject.jmod
/usr/lib/jvm/java-9-openjdk-amd64/jmods/jdk.jvmstat.jmod
/usr/lib/jvm/java-9-openjdk-amd64/jmods/jdk.jvmstat.rmi.jmod
/usr/lib/jvm/java-9-openjdk-amd64/jmods/jdk.localedata.jmod
/usr/lib/jvm/java-9-openjdk-amd64/jmods/jdk.management.jmod
/usr/lib/jvm/java-9-openjdk-amd64/jmods/jdk.naming.dns.jmod
/usr/lib/jvm/java-9-openjdk-amd64/jmods/jdk.naming.rmi.jmod
/usr/lib/jvm/java-9-openjdk-amd64/jmods/jdk.pack200.jmod
/usr/lib/jvm/java-9-openjdk-amd64/jmods/jdk.policytool.jmod
/usr/lib/jvm/java-9-openjdk-amd64/jmods/jdk.rmic.jmod
/usr/lib/jvm/java-9-openjdk-amd64/jmods/jdk.scripting.nashorn.jmod
/usr/lib/jvm/java-9-openjdk-amd64/jmods/jdk.scripting.nashorn.shell.jmod
/usr/lib/jvm/java-9-openjdk-amd64/jmods/jdk.sctp.jmod
/usr/lib/jvm/java-9-openjdk-amd64/jmods/jdk.security.auth.jmod
/usr/lib/jvm/java-9-openjdk-amd64/jmods/jdk.security.jgss.jmod
/usr/lib/jvm/java-9-openjdk-amd64/jmods/jdk.unsupported.jmod
/usr/lib/jvm/java-9-openjdk-amd64/jmods/jdk.vm.ci.jmod
/usr/lib/jvm/java-9-openjdk-amd64/jmods/jdk.xml.bind.jmod
/usr/lib/jvm/java-9-openjdk-amd64/jmods/jdk.xml.dom.jmod
/usr/lib/jvm/java-9-openjdk-amd64/jmods/jdk.xml.ws.jmod
/usr/lib/jvm/java-9-openjdk-amd64/jmods/jdk.zipfs.jmod
/usr/lib/jvm/java-9-openjdk-amd64/lib/accessibility.properties
/usr/lib/jvm/java-9-openjdk-amd64/lib/amd64
/usr/lib/jvm/java-9-openjdk-amd64/lib/classlist
/usr/lib/jvm/java-9-openjdk-amd64/lib/ct.sym
/usr/lib/jvm/java-9-openjdk-amd64/lib/jar.binfmt
/usr/lib/jvm/java-9-openjdk-amd64/lib/jexec
/usr/lib/jvm/java-9-openjdk-amd64/lib/logging.properties
/usr/lib/jvm/java-9-openjdk-amd64/lib/management
/usr/lib/jvm/java-9-openjdk-amd64/lib/modules
/usr/lib/jvm/java-9-openjdk-amd64/lib/net.properties
/usr/lib/jvm/java-9-openjdk-amd64/lib/psfont.properties.ja
/usr/lib/jvm/java-9-openjdk-amd64/lib/psfontj2d.properties
/usr/lib/jvm/java-9-openjdk-amd64/lib/security
/usr/lib/jvm/java-9-openjdk-amd64/lib/sound.properties
/usr/lib/jvm/java-9-openjdk-amd64/lib/swing.properties
/usr/lib/jvm/java-9-openjdk-amd64/lib/tzdb.dat
/usr/lib/jvm/java-9-openjdk-amd64/lib/amd64/jli
/usr/lib/jvm/java-9-openjdk-amd64/lib/amd64/jvm.cfg
/usr/lib/jvm/java-9-openjdk-amd64/lib/amd64/jvm.cfg-default
/usr/lib/jvm/java-9-openjdk-amd64/lib/amd64/libattach.so
/usr/lib/jvm/java-9-openjdk-amd64/lib/amd64/libawt.so
/usr/lib/jvm/java-9-openjdk-amd64/lib/amd64/libawt_headless.so
/usr/lib/jvm/java-9-openjdk-amd64/lib/amd64/libawt_xawt.so
/usr/lib/jvm/java-9-openjdk-amd64/lib/amd64/libdt_socket.so
/usr/lib/jvm/java-9-openjdk-amd64/lib/amd64/libfontmanager.so
/usr/lib/jvm/java-9-openjdk-amd64/lib/amd64/libinstrument.so
/usr/lib/jvm/java-9-openjdk-amd64/lib/amd64/libj2gss.so
/usr/lib/jvm/java-9-openjdk-amd64/lib/amd64/libj2pcsc.so
/usr/lib/jvm/java-9-openjdk-amd64/lib/amd64/libj2pkcs11.so
/usr/lib/jvm/java-9-openjdk-amd64/lib/amd64/libjaas_unix.so
/usr/lib/jvm/java-9-openjdk-amd64/lib/amd64/libjava.so
/usr/lib/jvm/java-9-openjdk-amd64/lib/amd64/libjavajpeg.so
/usr/lib/jvm/java-9-openjdk-amd64/lib/amd64/libjawt.so
/usr/lib/jvm/java-9-openjdk-amd64/lib/amd64/libjdwp.so
/usr/lib/jvm/java-9-openjdk-amd64/lib/amd64/libjimage.so
/usr/lib/jvm/java-9-openjdk-amd64/lib/amd64/libjsig.so
/usr/lib/jvm/java-9-openjdk-amd64/lib/amd64/libjsound.so
/usr/lib/jvm/java-9-openjdk-amd64/lib/amd64/libjsoundalsa.so
/usr/lib/jvm/java-9-openjdk-amd64/lib/amd64/liblcms.so
/usr/lib/jvm/java-9-openjdk-amd64/lib/amd64/libmanagement.so
/usr/lib/jvm/java-9-openjdk-amd64/lib/amd64/libmanagement_ext.so
/usr/lib/jvm/java-9-openjdk-amd64/lib/amd64/libmlib_image.so
/usr/lib/jvm/java-9-openjdk-amd64/lib/amd64/libnet.so
/usr/lib/jvm/java-9-openjdk-amd64/lib/amd64/libnio.so
/usr/lib/jvm/java-9-openjdk-amd64/lib/amd64/libprefs.so
/usr/lib/jvm/java-9-openjdk-amd64/lib/amd64/librmi.so
/usr/lib/jvm/java-9-openjdk-amd64/lib/amd64/libsaproc.so
/usr/lib/jvm/java-9-openjdk-amd64/lib/amd64/libsctp.so
/usr/lib/jvm/java-9-openjdk-amd64/lib/amd64/libsplashscreen.so
/usr/lib/jvm/java-9-openjdk-amd64/lib/amd64/libsunec.so
/usr/lib/jvm/java-9-openjdk-amd64/lib/amd64/libunpack.so
/usr/lib/jvm/java-9-openjdk-amd64/lib/amd64/libverify.so
/usr/lib/jvm/java-9-openjdk-amd64/lib/amd64/libzip.so
/usr/lib/jvm/java-9-openjdk-amd64/lib/amd64/server
/usr/lib/jvm/java-9-openjdk-amd64/lib/amd64/jli/libjli.so
/usr/lib/jvm/java-9-openjdk-amd64/lib/amd64/server/Xusage.txt
/usr/lib/jvm/java-9-openjdk-amd64/lib/amd64/server/classes.jsa
/usr/lib/jvm/java-9-openjdk-amd64/lib/amd64/server/libjsig.so
/usr/lib/jvm/java-9-openjdk-amd64/lib/amd64/server/libjvm.so
/usr/lib/jvm/java-9-openjdk-amd64/lib/management/jmxremote.access
/usr/lib/jvm/java-9-openjdk-amd64/lib/management/management.properties
/usr/lib/jvm/java-9-openjdk-amd64/lib/security/US_export_policy.jar
/usr/lib/jvm/java-9-openjdk-amd64/lib/security/blacklisted.certs
/usr/lib/jvm/java-9-openjdk-amd64/lib/security/cacerts
/usr/lib/jvm/java-9-openjdk-amd64/lib/security/java.policy
/usr/lib/jvm/java-9-openjdk-amd64/lib/security/java.security
/usr/lib/jvm/java-9-openjdk-amd64/lib/security/local_policy.jar
/usr/lib/jvm/java-9-openjdk-amd64/lib/security/nss.cfg
/usr/lib/jvm/java-9-openjdk-amd64/man/ja
/usr/lib/jvm/java-9-openjdk-amd64/man/ja_JP.UTF-8
/usr/lib/jvm/java-9-openjdk-amd64/man/man1
/usr/lib/jvm/java-9-openjdk-amd64/man/ja_JP.UTF-8/man1
/usr/lib/jvm/java-9-openjdk-amd64/man/ja_JP.UTF-8/man1/java.1.gz
/usr/lib/jvm/java-9-openjdk-amd64/man/ja_JP.UTF-8/man1/jjs.1.gz
/usr/lib/jvm/java-9-openjdk-amd64/man/ja_JP.UTF-8/man1/keytool.1.gz
/usr/lib/jvm/java-9-openjdk-amd64/man/ja_JP.UTF-8/man1/orbd.1.gz
/usr/lib/jvm/java-9-openjdk-amd64/man/ja_JP.UTF-8/man1/pack200.1.gz
/usr/lib/jvm/java-9-openjdk-amd64/man/ja_JP.UTF-8/man1/rmid.1.gz
/usr/lib/jvm/java-9-openjdk-amd64/man/ja_JP.UTF-8/man1/rmiregistry.1.gz
/usr/lib/jvm/java-9-openjdk-amd64/man/ja_JP.UTF-8/man1/servertool.1.gz
/usr/lib/jvm/java-9-openjdk-amd64/man/ja_JP.UTF-8/man1/tnameserv.1.gz
/usr/lib/jvm/java-9-openjdk-amd64/man/ja_JP.UTF-8/man1/unpack200.1.gz
/usr/lib/jvm/java-9-openjdk-amd64/man/man1/java.1.gz
/usr/lib/jvm/java-9-openjdk-amd64/man/man1/jjs.1.gz
/usr/lib/jvm/java-9-openjdk-amd64/man/man1/keytool.1.gz
/usr/lib/jvm/java-9-openjdk-amd64/man/man1/orbd.1.gz
/usr/lib/jvm/java-9-openjdk-amd64/man/man1/pack200.1.gz
/usr/lib/jvm/java-9-openjdk-amd64/man/man1/rmid.1.gz
/usr/lib/jvm/java-9-openjdk-amd64/man/man1/rmiregistry.1.gz
/usr/lib/jvm/java-9-openjdk-amd64/man/man1/servertool.1.gz
/usr/lib/jvm/java-9-openjdk-amd64/man/man1/tnameserv.1.gz
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[jmansilla]

Java 1.9 is not supported, and probably wont be until is officially released.
Don't you java 1.7 or 1.8, or means for getting any of those?

Regards

[ROZBEH]

Let me try with java 1.7 or 1.8 and see what happens

[ROZBEH]

Thanks a lot.
The problem is solved now. I followed the instructions from the following link and downgrade my java version.

http://ask.xmodulo.com/change-default-java-version-linux.html

[jmansilla]

great

[ROZBEH]

Thanks for your prompt replies :-)