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update changelog
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Matthew MacManes committed Feb 15, 2019
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6. Changelog
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Version 2.1
Version 2.1.1

- Updated conda environment name to `orp` rather than `orp_v2`
- Users may now specify kmer length to be used for Trinity using flag `TRINITY_KMER=INT` and for SPAdes using flags `SPADES1_KMER=INT` for the 1st SPAdes run and `SPADES2_KMER=INT` for the 2nd SPAdes run. Note the max kmer for trinity is 32, and for SPAdes it is 96. For all assemblies, the kmer length must be read_length-1 at a maximum.
- Add a check to make sure reads are of sufficient length given your selected assembly kmer length

Version 2.1.0

- Strand specific libraries are now assembled properly, this is enabled by adding the `STRAND=` flag. Both `RF` and `FR` are options, tho `RF` is the most common option.
- There is a new tool, `strandeval.mk`, which helps you evaluate the strandedness of your assembly.
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