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fix spaces
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macmanes committed Jun 13, 2017
1 parent cfef2aa commit f23cc8f
Showing 1 changed file with 8 additions and 8 deletions.
16 changes: 8 additions & 8 deletions Makefile
Original file line number Diff line number Diff line change
Expand Up @@ -32,16 +32,16 @@ orthofuser:

blast:
ifeq "$(shell basename $(shell which blastp))" "blastp"
@echo "BLASTP is already installed"
@echo "BLASTP is already installed"
else
@echo "blastp is not installed, installing now..."
cd ${DIR}/software &$ curl -LO ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/LATEST/ncbi-blast-2.6.0+-x64-linux.tar.gz && tar -zxf ncbi-blast-2.6.0+-x64-linux.tar.gz
export PATH=${DIR}/software/ncbi-blast-2.6.0+/bin:$$PATH
@echo "blastp is not installed, installing now..."
cd ${DIR}/software &$ curl -LO ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/LATEST/ncbi-blast-2.6.0+-x64-linux.tar.gz && tar -zxf ncbi-blast-2.6.0+-x64-linux.tar.gz
export PATH=${DIR}/software/ncbi-blast-2.6.0+/bin:$$PATH
endif

spades:
ifeq "$(shell basename $(shell which spades.py))" "spades.py"
@echo "SPAdes is already installed"
@echo "SPAdes is already installed"
else
cd ${DIR}/software && \
curl -LO http://cab.spbu.ru/files/release3.10.1/SPAdes-3.10.1-Linux.tar.gz && tar -zxf SPAdes-3.10.1-Linux.tar.gz && \
Expand All @@ -50,7 +50,7 @@ endif

trinity:
ifeq "$(shell basename $(shell which Trinity))" "Trinity"
@echo "Trinity is already installed"
@echo "Trinity is already installed"
else
cd ${DIR}/software && \
git clone https://github.com/trinityrnaseq/trinityrnaseq.git && cd trinityrnaseq && make
Expand All @@ -59,7 +59,7 @@ endif

shannon:
ifeq "$(shell basename $(shell which shannon.py))" "shannon.py"
@echo "Shannon is already installed"
@echo "Shannon is already installed"
else
cd ${DIR}/software && \
git clone https://github.com/sreeramkannan/Shannon.git
Expand All @@ -68,7 +68,7 @@ endif

seqtk:
ifeq "$(shell basename $(shell which seqtk))" "seqtk"
@echo "seqtk is already installed"
@echo "seqtk is already installed"
else
cd ${DIR}/software && \
git clone https://github.com/lh3/seqtk.git && cd seqtk && make
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