hdf5: 1.14.1-2

[eborisch]

Maintainer update & bumps.

Tried to tag those with multiple ports impacted.

[macportsbot]

Notifying maintainers:
@MarcusCalhoun-Lopez for port deal.ii, octave, cgnslib, gmsh, libmed, xdmf.
@neurodroid for port py-stfio.
@mtorrent for port abinit.
@jswoboda for port digital_rf.
@lpsinger for port lal.
@barracuda156 for port R-HDF5Array, R-rhdf5, R-rhdf5filters.
@stromnov for port InsightToolkit-devel, vtk, shogun-devel.
@egull for port ALPSMaxent.
@ryanvolz for port digital_rf.
@remkos for port nco.
@mf2k for port ncpp.
@tenomoto for port gnudatalanguage, cdo, grads, hdfeos5, magicspp, metview, nco, netcdf, wgrib2.
@petrrr for port py-nio.
@galexv for port ALPSCore.
@ra1nb0w for port AppCSXCAD, openEMS, CSXCAD.
@jjstickel for port paraview.
@rdbisme for port vtk.
@jswhit for port py-netcdf4.
@Schamschula for port mathgl, armadillo.
@johndesanto for port gmtsar.
@dstrubbe for port paraview.
@BSeppke for port vigra.
@jcupitt for port vips.

[Schamschula]

Both armadillo and mathgl have a clean build.

I did see the following for hdf5:

Warning: Configuration logfiles contain indications of -Wimplicit-function-declaration; check that features were not accidentally disabled:
strchr: found in hdf5-1.14.1-2/config.log

[barracuda156]

@eborisch Is it possible to address this along? https://trac.macports.org/ticket/67273
I need Fortran support in hdf5 for several new ports which otherwise cannot be built.

[eborisch]

Both armadillo and mathgl have a clean build.

I did see the following for hdf5:

Warning: Configuration logfiles contain indications of -Wimplicit-function-declaration; check that features were not accidentally disabled: strchr: found in hdf5-1.14.1-2/config.log

I think this is OK; it appears to be explicitly testing for how to have clang complain about undeclared functions:

  configure:30930: checking for /usr/bin/clang options needed to detect all undeclared functions
  configure:30960: /usr/bin/clang -c  -std=c99  -Wall -Warray-bounds -Wcast-qual [snip]
  conftest.c:99:8: error: call to undeclared library function 'strchr' with type [snip]
  (void) strchr;
         ^
  conftest.c:99:8: note: include the header <string.h> or explicitly provide a declaration for 'strchr'```

[Schamschula]

Both armadillo and mathgl have a clean build.
I did see the following for hdf5:
Warning: Configuration logfiles contain indications of -Wimplicit-function-declaration; check that features were not accidentally disabled: strchr: found in hdf5-1.14.1-2/config.log

I think this is OK; it appears to be explicitly testing for how to have clang complain about undeclared functions:

  configure:30930: checking for /usr/bin/clang options needed to detect all undeclared functions
  configure:30960: /usr/bin/clang -c  -std=c99  -Wall -Warray-bounds -Wcast-qual [snip]
  conftest.c:99:8: error: call to undeclared library function 'strchr' with type [snip]
  (void) strchr;
         ^
  conftest.c:99:8: note: include the header <string.h> or explicitly provide a declaration for 'strchr'```

Then you should add something like

configure.checks.implicit_function_declaration.whitelist-append strchr