legacy_effects_in_rearing_systems

This repository containes the R-scripts used in the analysis and figure generations in the paper: Aquaculture rearing systems induce no legacy effects in Atlantic cod larvae or their rearing water bacterial communities

Name		Name	Last commit message	Last commit date
Latest commit History 17 Commits
1a_phylogenetic_tree_construction_zOTU.Rmd		1a_phylogenetic_tree_construction_zOTU.Rmd
1b_create_phyloseq _zOTU.Rmd		1b_create_phyloseq _zOTU.Rmd
1c_zOTU_normalisation.Rmd		1c_zOTU_normalisation.Rmd
2_alpha_diversity.Rmd		2_alpha_diversity.Rmd
3_beta-diversity.Rmd		3_beta-diversity.Rmd
4_composition.Rmd		4_composition.Rmd
5_DeSeq2 12 DPH survival.Rmd		5_DeSeq2 12 DPH survival.Rmd
6_flow_cytometry.Rmd		6_flow_cytometry.Rmd
7_survival.Rmd		7_survival.Rmd
8_larval_weight.Rmd		8_larval_weight.Rmd
9_challenge_survival.Rmd		9_challenge_survival.Rmd
README.md		README.md
ggrare.R		ggrare.R
import_sintax-file.R		import_sintax-file.R
min.mean.sd.max.R		min.mean.sd.max.R
pick_new_outgroup.R		pick_new_outgroup.R
plot.settings.R		plot.settings.R
summarize_taxa_functions.R		summarize_taxa_functions.R

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