Recreated the gerber files (40mil drill size issue).

IR_raw_receiver.brd

@@ -1,6 +1,6 @@
-PCBNEW-BOARD Version 2 date Wed 23 Jan 2013 01:36:53 PM CET
+PCBNEW-BOARD Version 2 date Thu 24 Jan 2013 03:16:21 AM CET
 
-# Created by Pcbnew(2013-01-21 BZR 3918)-testing
+# Created by Pcbnew(2013-01-23 BZR 3920)-testing
 
 $GENERAL
 encoding utf-8
@@ -22,7 +22,7 @@ $EndGENERAL
 $SHEETDESCR
 Sheet User 6298 4000
 Title "IR_raw_receiver"
-Date "23 jan 2013"
+Date "24 jan 2013"
 Rev "1.10"
 Comp "2012 - blog.spitzenpfeil.org"
 Comment1 ""
@@ -62,7 +62,7 @@ Pad2MaskClearance 0
 SolderMaskMinWidth 0
 AuxiliaryAxisOrg 0 0
 VisibleElements FFFFFFBF
-PcbPlotParams (pcbplotparams (layerselection 284196865) (usegerberextensions true) (excludeedgelayer false) (linewidth 80) (plotframeref false) (viasonmask false) (mode 1) (useauxorigin false) (hpglpennumber 1) (hpglpenspeed 20) (hpglpendiameter 15) (hpglpenoverlay 0) (psnegative false) (psa4output false) (plotreference true) (plotvalue true) (plotothertext true) (plotinvisibletext false) (padsonsilk false) (subtractmaskfromsilk true) (outputformat 1) (mirror false) (drillshape 1) (scaleselection 1) (outputdirectory gerber_files/))
+PcbPlotParams (pcbplotparams (layerselection 284196865) (usegerberextensions true) (excludeedgelayer false) (linewidth 80) (plotframeref false) (viasonmask false) (mode 1) (useauxorigin false) (hpglpennumber 1) (hpglpenspeed 20) (hpglpendiameter 15) (hpglpenoverlay 0) (psnegative false) (psa4output false) (plotreference true) (plotvalue true) (plotothertext true) (plotinvisibletext false) (padsonsilk false) (subtractmaskfromsilk true) (outputformat 1) (mirror false) (drillshape 0) (scaleselection 1) (outputdirectory gerber_files/))
 $EndSETUP
 
 $EQUIPOT

gerber_files/IR_raw_receiver-Mask_Back.gbs → gerber_files/IR_raw_receiver-B_Mask.gbs

@@ -1,22 +1,22 @@
-G04 (created by PCBNEW-RS274X (2012-jan-04)-stable) date Sat 31 Mar 2012 10:17:58 PM CEST*
-G01*
-G70*
-G90*
+G04 (created by PCBNEW (2013-01-23 BZR 3920)-testing) date Thu 24 Jan 2013 03:16:15 AM CET*
 %MOIN*%
 G04 Gerber Fmt 3.4, Leading zero omitted, Abs format*
 %FSLAX34Y34*%
+G01*
+G70*
+G90*
 G04 APERTURE LIST*
-%ADD10C,0.008000*%
-%ADD11C,0.015000*%
-%ADD12R,0.055000X0.055000*%
-%ADD13C,0.055000*%
-%ADD14C,0.160000*%
-%ADD15C,0.066000*%
-%ADD16R,0.060000X0.060000*%
-%ADD17C,0.060000*%
-%ADD18R,0.090000X0.062000*%
-%ADD19O,0.090000X0.062000*%
-%ADD20O,0.059100X0.047200*%
+%ADD10C,3.14961e-06*%
+%ADD11C,0.015*%
+%ADD12R,0.06X0.06*%
+%ADD13C,0.06*%
+%ADD14C,0.16*%
+%ADD15C,0.066*%
+%ADD16R,0.09X0.062*%
+%ADD17O,0.09X0.062*%
+%ADD18R,0.055X0.055*%
+%ADD19C,0.055*%
+%ADD20O,0.0591X0.0472*%
 G04 APERTURE END LIST*
 G54D10*
 G54D11*
@@ -36,14 +36,19 @@ X34055Y-17610D03*
 X34055Y-18610D03*
 X34055Y-19610D03*
 X34055Y-20610D03*
+G54D12*
+X20669Y-17110D03*
+G54D13*
+X20669Y-18110D03*
+X20669Y-19110D03*
 G54D14*
 X21260Y-14370D03*
 G54D15*
 X37795Y-17610D03*
 X37795Y-18610D03*
-G54D16*
+G54D12*
 X29421Y-17110D03*
-G54D17*
+G54D13*
 X30421Y-17110D03*
 X29421Y-18110D03*
 X30421Y-18110D03*
@@ -53,27 +58,22 @@ G54D14*
 X37401Y-21850D03*
 X37401Y-14370D03*
 X21259Y-21850D03*
-G54D12*
-X20669Y-17110D03*
-G54D13*
-X20669Y-18110D03*
-X20669Y-19110D03*
-G54D18*
+G54D16*
 X23303Y-16610D03*
-G54D19*
+G54D17*
 X23303Y-17610D03*
 X23303Y-18610D03*
 X23303Y-19610D03*
 X26303Y-19610D03*
 X26303Y-18610D03*
 X26303Y-17610D03*
 X26303Y-16610D03*
-G54D12*
+G54D18*
 X27756Y-17110D03*
-G54D13*
+G54D19*
 X27756Y-18110D03*
 X27756Y-19110D03*
-G54D17*
+G54D13*
 X27394Y-15157D03*
 X23394Y-15157D03*
 X27394Y-14173D03*
@@ -84,16 +84,17 @@ X30740Y-20472D03*
 X26740Y-20472D03*
 X32315Y-14173D03*
 X28315Y-14173D03*
-G54D13*
+G54D19*
 X22047Y-18610D03*
 X22047Y-17610D03*
-G54D17*
+G54D13*
 X36417Y-16110D03*
 X36417Y-20110D03*
 G54D12*
 X31799Y-21850D03*
 G54D13*
 X30799Y-21850D03*
+G54D19*
 X32783Y-16338D03*
 X31783Y-16338D03*
 X31783Y-19882D03*