FQPath

A MATLAB package for No-Reference (NR) Focus Quality Assessment (FQA) of Digital Pathology Images

General purpose:

• You can use this MATLAB package to score no-reference (NR) focus quality assessment (FQA) of whole slide images in digital pathology to grade out-of-focus

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Requirements:

• MATLAB R2015b

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MATLAB Codes:

Demo function:

• demo_NR_FQA.m

Utility functions:

• FQPath.m
• generalized_Gaussian_for_fitting.m

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Publication

Hosseini, Mahdi S., Jasper AZ Brawley-Hayes, Yueyang Zhang, Lyndon Chan, Konstantinos N. Plataniotis, and Savvas Damaskinos. "Focus Quality Assessment of High-Throughput Whole Slide Imaging in Digital Pathology." IEEE Transactions on Medical Imaging (2019)

You can also read the paper from arXiv link

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Author:

Mahdi S. Hosseini
Email: mahdi.hosseini@mail.utoronto.ca
http://www.dsp.utoronto.ca/~mhosseini/

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Citation:

@article{hosseini2019focus,
title={Focus Quality Assessment of High-Throughput Whole Slide Imaging in Digital Pathology},
author={Hosseini, Mahdi S and Brawley-Hayes, Jasper AZ and Zhang, Yueyang and Chan, Lyndon and Plataniotis, Konstantinos N and Damaskinos, Savvas},
journal={IEEE Transactions on Medical Imaging},
year={2019},
publisher={IEEE}
}