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Changed merge-gvcfs deletion handling to call <DEL> when padding base… Run BioKotlin Tests When Opening a PR #30: Pull request #34 opened by tcasstevens
July 10, 2024 13:14 4m 21s merge-gvcfs-del
merge-gvcfs-del
July 10, 2024 13:14 4m 21s
Changed merge-gvcfs to only first base of deletion as reference if it… Run BioKotlin Tests When Opening a PR #29: Pull request #33 opened by tcasstevens
July 3, 2024 19:48 3m 58s merge-gvcfs-del-padded-base
merge-gvcfs-del-padded-base
July 3, 2024 19:48 3m 58s
Fasta gzip ext Run BioKotlin Tests When Opening a PR #28: Pull request #32 opened by tcasstevens
July 2, 2024 19:12 3m 46s fasta-gzip-ext
fasta-gzip-ext
July 2, 2024 19:12 3m 46s
Mutate proteins Run BioKotlin Tests When Opening a PR #27: Pull request #31 opened by tcasstevens
July 1, 2024 17:56 4m 1s mutate-proteins
mutate-proteins
July 1, 2024 17:56 4m 1s
fixed sort issue in SeqRangeSort Run BioKotlin Tests When Opening a PR #26: Pull request #28 opened by lynnjo
May 17, 2024 16:52 3m 48s sortFix
sortFix
May 17, 2024 16:52 3m 48s
Merge gvcfs to vcf Run BioKotlin Tests When Opening a PR #25: Pull request #27 opened by tcasstevens
April 17, 2024 16:10 3m 52s merge-gvcfs-to-vcf
merge-gvcfs-to-vcf
April 17, 2024 16:10 3m 52s
Vcf utils improve Run BioKotlin Tests When Opening a PR #24: Pull request #26 opened by tcasstevens
April 15, 2024 19:58 3m 53s vcf-utils-improve
vcf-utils-improve
April 15, 2024 19:58 3m 53s
Renamed BioKotlin.kt to biokotlin.kt Run BioKotlin Tests When Opening a PR #23: Pull request #25 opened by tcasstevens
April 15, 2024 17:39 3m 55s rename-biokotlin-kt
rename-biokotlin-kt
April 15, 2024 17:39 3m 55s
Add log4jv2 Run BioKotlin Tests When Opening a PR #22: Pull request #24 opened by tcasstevens
April 10, 2024 14:34 3m 53s add-log4jv2
add-log4jv2
April 10, 2024 14:34 3m 53s
Validate correct gvcfs Run BioKotlin Tests When Opening a PR #21: Pull request #23 opened by tcasstevens
April 9, 2024 14:58 4m 3s validate-correct-gvcfs
validate-correct-gvcfs
April 9, 2024 14:58 4m 3s
Read vcf utility Run BioKotlin Tests When Opening a PR #20: Pull request #21 opened by tcasstevens
April 2, 2024 19:10 5m 22s read-vcf-utility
read-vcf-utility
April 2, 2024 19:10 5m 22s
Clikt for biokotlin Run BioKotlin Tests When Opening a PR #19: Pull request #20 opened by tcasstevens
March 27, 2024 17:33 1m 0s clikt_forBiokotlin
clikt_forBiokotlin
March 27, 2024 17:33 1m 0s
added variant sorting to MafToGVCF Run BioKotlin Tests When Opening a PR #18: Pull request #19 opened by lynnjo
March 25, 2024 13:07 3m 25s mafToGvcf_sortVariants
mafToGvcf_sortVariants
March 25, 2024 13:07 3m 25s
fix MAFToGvCF chrom name parsing for src and test Run BioKotlin Tests When Opening a PR #17: Pull request #18 opened by lynnjo
March 20, 2024 17:06 3m 56s mafToGvcf_chromNameFix
mafToGvcf_chromNameFix
March 20, 2024 17:06 3m 56s
change convertStates default to true, add param to NucSeq() Run BioKotlin Tests When Opening a PR #16: Pull request #17 opened by lynnjo
February 1, 2024 14:56 3m 19s nucseq_convertstates
nucseq_convertstates
February 1, 2024 14:56 3m 19s
add defaults to optional parameters for getVariantContextsFromMAF Run BioKotlin Tests When Opening a PR #15: Pull request #16 opened by aberthel
January 11, 2024 15:41 3m 28s gvcf_defaults
gvcf_defaults
January 11, 2024 15:41 3m 28s
Fix gvcf bugs Run BioKotlin Tests When Opening a PR #14: Pull request #15 opened by aberthel
January 10, 2024 16:22 3m 49s fix_gvcf_bugs
fix_gvcf_bugs
January 10, 2024 16:22 3m 49s
remove annoying log message Run BioKotlin Tests When Opening a PR #13: Pull request #14 opened by lynnjo
November 10, 2023 18:50 4m 39s remove_graph_comment
remove_graph_comment
November 10, 2023 18:50 4m 39s
Port ma fto gvcf updates Run BioKotlin Tests When Opening a PR #12: Pull request #13 opened by lynnjo
November 6, 2023 11:40 4m 56s port_MAFtoGVCF_updates
port_MAFtoGVCF_updates
November 6, 2023 11:40 4m 56s
Correct build.gradle.kts for publishing to Maven Central Run BioKotlin Tests When Opening a PR #11: Pull request #12 opened by tcasstevens
October 17, 2023 17:39 5m 16s correct_build_for_publish
correct_build_for_publish
October 17, 2023 17:39 5m 16s
Update to java17 Run BioKotlin Tests When Opening a PR #10: Pull request #11 opened by zrm22
October 16, 2023 18:19 4m 36s update-to-java17
update-to-java17
October 16, 2023 18:19 4m 36s
Run BioKotlin Tests When Opening a PR Run BioKotlin Tests When Opening a PR #9: Manually run by zrm22
October 13, 2023 17:55 4m 34s update-to-java17
update-to-java17
October 13, 2023 17:55 4m 34s
Run BioKotlin Tests When Opening a PR Run BioKotlin Tests When Opening a PR #8: Manually run by zrm22
October 13, 2023 17:46 29s update-to-java17
update-to-java17
October 13, 2023 17:46 29s
Run BioKotlin Tests When Opening a PR Run BioKotlin Tests When Opening a PR #7: Manually run by zrm22
October 13, 2023 17:40 2m 56s update-to-java17
update-to-java17
October 13, 2023 17:40 2m 56s
Added back LineA.maf, now in testData folder. updated junit Run BioKotlin Tests When Opening a PR #6: Pull request #10 opened by lynnjo
August 11, 2023 15:55 3m 32s readd_data_folder
readd_data_folder
August 11, 2023 15:55 3m 32s