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@maiziezhoulab

Maizie Zhou Lab

Code repositories from the Maizie Zhou Lab @ Vanderbilt BME/CS/DSI.

Pinned

  1. RNN_BrainMaturation RNN_BrainMaturation Public

    Emergence of prefrontal neuron maturation properties by training recurrent neural networks in cognitive tasks.

    Python 2

  2. ADEPT ADEPT Public

    ADEPT: Autoencoder with Differentially Expressed Genes and Imputation for a Robust Spatial Transcriptomics Clustering

    Python 6 1

  3. LRSV_combo LRSV_combo Public

    Long Read Based SV Calling Tools Analysis

    Python 8

  4. MaskGraphene MaskGraphene Public

    Forked from OliiverHu/MaskGraphene

    MaskGraphene: Advancing joint embedding, clustering, and batch correction for spatial transcriptomics using graph-based self-supervised learning

    Python 1

  5. VolcanoSV VolcanoSV Public

    VolcanoSV enables accurate and robust structural variant calling in diploid genomes from single-molecule long read sequencing

    C++ 1

  6. CNVeil CNVeil Public

    CNVeil enables accurate and robust tumor subclone identification and copy number estimation from single-cell DNA sequencing data

    Python 1

Repositories

Showing 10 of 21 repositories
  • ADEPT Public

    ADEPT: Autoencoder with Differentially Expressed Genes and Imputation for a Robust Spatial Transcriptomics Clustering

    Python 6 1 1 0 Updated May 3, 2024
  • VolcanoSV Public

    VolcanoSV enables accurate and robust structural variant calling in diploid genomes from single-molecule long read sequencing

    C++ 1 MIT 0 0 0 Updated Mar 28, 2024
  • CNVeil Public

    CNVeil enables accurate and robust tumor subclone identification and copy number estimation from single-cell DNA sequencing data

    Python 1 MIT 0 0 0 Updated Mar 25, 2024
  • LRSV_combo Public

    Long Read Based SV Calling Tools Analysis

    Python 8 MIT 0 0 0 Updated Mar 22, 2024
  • MaskGraphene Public Forked from OliiverHu/MaskGraphene

    MaskGraphene: Advancing joint embedding, clustering, and batch correction for spatial transcriptomics using graph-based self-supervised learning

    Python 0 GPL-3.0 2 0 0 Updated Feb 23, 2024
  • Jupyter Notebook 0 0 0 0 Updated Feb 7, 2024
  • RegionIndel Public

    Large indel detection in region-based phased diploid assemblies from linked-reads

    Python 0 MIT 0 0 0 Updated Jan 22, 2024
  • AquilaSV Public

    Structural variant detection from region-based phased diploid assemblies for 10X and stLFR linked-reads

    Python 0 MIT 0 1 0 Updated Oct 17, 2023
  • embSV Public

    embSV is a long-reads based, haplotype-resolved assembly-based structural variant detection tool. It employs the power of natural language processing to assist partitioning reads for halotype-specific assembly.

    C++ 0 2 0 0 Updated Aug 15, 2022
  • AquilaDeepFilter Public

    AquilaDeepFilter aims to automatically filter genome-wide false positive large deletions.

    Python 0 0 0 0 Updated Jul 15, 2022

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