bfx

These are bioinformatics-related scripts and modules I wrote that I thought might be useful to others.

Name		Name	Last commit message	Last commit date
Latest commit History 253 Commits
old		old
tests		tests
utillib @ 8615bf2		utillib @ 8615bf2
.gitignore		.gitignore
.gitmodules		.gitmodules
.shed.yml		.shed.yml
Makefile		Makefile
README.md		README.md
VERSION		VERSION
__init__.py		__init__.py
align-bowtie.sh		align-bowtie.sh
align-mem.sh		align-mem.sh
align-simple.sh		align-simple.sh
align.py		align.py
alignview.py		alignview.py
cigarlib.py		cigarlib.py
explain-flag.py		explain-flag.py
fastagenerators.py		fastagenerators.py
fastq-type.py		fastq-type.py
gamtools.py		gamtools.py
get-depths.py		get-depths.py
getcontext.py		getcontext.py
getreads.py		getreads.py
getseq.sh		getseq.sh
homopoly.awk		homopoly.awk
intervallib.py		intervallib.py
nm-ratio-select.py		nm-ratio-select.py
pair_align.py		pair_align.py
pairing.awk		pairing.awk
parse-test-align.py		parse-test-align.py
readsfq.c		readsfq.c
sam-stats.py		sam-stats.py
sam-tags.pl		sam-tags.pl
samflags.py		samflags.py
samreader.py		samreader.py
samtobam.sh		samtobam.sh
slurm-free.sh		slurm-free.sh
slurm-wait.py		slurm-wait.py
sub-matrix.txt		sub-matrix.txt
subsample-fq.sh		subsample-fq.sh
swalign.c		swalign.c
swalign.h		swalign.h
swalign.py		swalign.py
trimmer.py		trimmer.py
trimmer.xml		trimmer.xml

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