SortImage.cxx

/*=========================================================================

  Program: GDCM (Grassroots DICOM). A DICOM library

  Copyright (c) 2006-2011 Mathieu Malaterre
  All rights reserved.
  See Copyright.txt or http://gdcm.sourceforge.net/Copyright.html for details.

     This software is distributed WITHOUT ANY WARRANTY; without even
     the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
     PURPOSE.  See the above copyright notice for more information.

=========================================================================*/
/*
 */
#include "gdcmSorter.h"
#include "gdcmScanner.h"
#include "gdcmDataSet.h"
#include "gdcmAttribute.h"


bool mysort(gdcm::DataSet const & ds1, gdcm::DataSet const & ds2 )
{
  //gdcm::Attribute<0x0020,0x0013> at1; // Instance Number
  gdcm::Attribute<0x0018,0x1060> at1; // Trigger Time
  gdcm::Attribute<0x0020,0x0032> at11; // Image Position (Patient)
  at1.Set( ds1 );
  at11.Set( ds1 );
  //gdcm::Attribute<0x0020,0x0013> at2;
  gdcm::Attribute<0x0018,0x1060> at2;
  gdcm::Attribute<0x0020,0x0032> at22;
  at2.Set( ds2 );
  at22.Set( ds2 );
  if( at11 == at22 )
    {
    return at1 < at2;
    }
  return at11 < at22;
}

bool mysort_part1(gdcm::DataSet const & ds1, gdcm::DataSet const & ds2 )
{
  gdcm::Attribute<0x0018,0x1060> at1;
  at1.Set( ds1 );
  gdcm::Attribute<0x0018,0x1060> at2;
  at2.Set( ds2 );
  return at1 < at2;
}

bool mysort_part2(gdcm::DataSet const & ds1, gdcm::DataSet const & ds2 )
{
  gdcm::Attribute<0x0020,0x0032> at1;
  at1.Set( ds1 );
  gdcm::Attribute<0x0020,0x0032> at2;
  at2.Set( ds2 );
  return at1 < at2;
}

// technically all files are in the same Frame of Reference, so this function
// should be a no-op
bool mysort_dummy(gdcm::DataSet const & ds1, gdcm::DataSet const & ds2 )
{
  gdcm::Attribute<0x0020,0x0052> at1; // FrameOfReferenceUID
  at1.Set( ds1 );
  gdcm::Attribute<0x0020,0x0052> at2;
  at2.Set( ds2 );
  return at1 < at2;
}

int main(int argc, char *argv[])
{
  if (argc < 2 ) return 1;
  const char *dirname = argv[1];
  gdcm::Directory dir;
  unsigned int nfiles = dir.Load( dirname );

  dir.Print( std::cout );

  gdcm::Sorter sorter;
  sorter.SetSortFunction( mysort );
  sorter.Sort( dir.GetFilenames() );

  std::cout << "Sorter:" << std::endl;
  sorter.Print( std::cout );

  gdcm::Sorter sorter2;
  sorter2.SetSortFunction( mysort_part1 );
  sorter2.StableSort( dir.GetFilenames() );
  sorter2.SetSortFunction( mysort_part2 );
  sorter2.StableSort( sorter2.GetFilenames() ); // IMPORTANT
  sorter2.SetSortFunction( mysort_dummy );
  sorter2.StableSort( sorter2.GetFilenames() ); // IMPORTANT

  std::cout << "Sorter2:" << std::endl;
  sorter2.Print( std::cout );

  gdcm::Scanner s;
  s.AddTag( gdcm::Tag(0x20,0x32) ); // Image Position (Patient)
  //s.AddTag( gdcm::Tag(0x20,0x37) ); // Image Orientation (Patient)
  s.Scan( dir.GetFilenames() );

  //s.Print( std::cout );

  // Count how many different IPP there are:
  const gdcm::Scanner::ValuesType &values = s.GetValues();
  size_t nvalues = values.size();
  std::cout << "There are " << nvalues << " different type of values" << std::endl;

  //std::cout << "nfiles=" << nfiles << std::endl;
  if( nfiles % nvalues != 0 )
    {
    std::cerr << "Impossible: this is a not a proper series" << std::endl;
    return 1;
    }
  std::cout << "Series is composed of " << (nfiles/nvalues) << " different 3D volumes" << std::endl;

  return 0;
}