Cannot find the mapped_code column in the compound file from FooDB

[johardi]

Hi,

I couldn't find the column that you are referring in the code below (line 115) where there is a mapped_code data in the column index 44 in the "Compound.csv" from FooDB. I checked today the file but there are only 16 columns. Do I miss something?

CKG/ckg/graphdb_builder/databases/parsers/foodbParser.py

Lines 114 to 117 in 6854c98

	compound_id = row[0]
	mapped_code = row[44]
	if str(mapped_code) != 'nan':
	compounds[compound_id] = mapped_code

[rodguinea]

After I built the graph (using Docker), I noticed that the "Food" Node is not connected to any other node.

[albsantosdel]

Hi,
FooDB (https://foodb.ca/) has changed the format in which they provide the data. We would need to modify the parser to adapt to these changes. 🐛 in FooDB parser.