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Merge branch 'feature/7732' into develop
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Conflicts:
	Code/Mantid/Framework/DataHandling/CMakeLists.txt

refs #7732
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keithnbrown committed Oct 24, 2013
2 parents a4f4e16 + 3b42125 commit 7f2f0d8
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6 changes: 6 additions & 0 deletions Code/Mantid/Framework/DataHandling/CMakeLists.txt
Expand Up @@ -19,6 +19,7 @@ set ( SRC_FILES
src/ISISRunLogs.cpp
src/Load.cpp
src/LoadAscii.cpp
src/LoadAscii2.cpp
src/LoadCalFile.cpp
src/LoadCanSAS1D.cpp
src/LoadCanSAS1D2.cpp
Expand Down Expand Up @@ -99,6 +100,7 @@ set ( SRC_FILES
src/SNSDataArchive.cpp
src/SNSDataArchiveICAT2.cpp
src/SaveAscii.cpp
src/SaveAscii2.cpp
src/SaveCSV.cpp
src/SaveCalFile.cpp
src/SaveCanSAS1D.cpp
Expand Down Expand Up @@ -148,6 +150,7 @@ set ( INC_FILES
inc/MantidDataHandling/ISISRunLogs.h
inc/MantidDataHandling/Load.h
inc/MantidDataHandling/LoadAscii.h
inc/MantidDataHandling/LoadAscii2.h
inc/MantidDataHandling/LoadCalFile.h
inc/MantidDataHandling/LoadCanSAS1D.h
inc/MantidDataHandling/LoadCanSAS1D2.h
Expand Down Expand Up @@ -223,6 +226,7 @@ set ( INC_FILES
inc/MantidDataHandling/SNSDataArchive.h
inc/MantidDataHandling/SNSDataArchiveICAT2.h
inc/MantidDataHandling/SaveAscii.h
inc/MantidDataHandling/SaveAscii2.h
inc/MantidDataHandling/SaveCSV.h
inc/MantidDataHandling/SaveCalFile.h
inc/MantidDataHandling/SaveCanSAS1D.h
Expand Down Expand Up @@ -276,6 +280,7 @@ set ( TEST_FILES
ISISDataArchiveTest.h
InstrumentRayTracerTest.h
LoadAsciiTest.h
LoadAscii2Test.h
LoadCalFileTest.h
LoadCanSAS1dTest.h
LoadDaveGrpTest.h
Expand Down Expand Up @@ -343,6 +348,7 @@ set ( TEST_FILES
SNSDataArchiveICAT2Test.h
SNSDataArchiveTest.h
SaveAsciiTest.h
SaveAscii2Test.h
SaveCSVTest.h
SaveCalFileTest.h
SaveCanSAS1dTest.h
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115 changes: 115 additions & 0 deletions Code/Mantid/Framework/DataHandling/inc/MantidDataHandling/LoadAscii2.h
@@ -0,0 +1,115 @@
#ifndef MANTID_DATAHANDLING_LoadAscii2_H_
#define MANTID_DATAHANDLING_LoadAscii2_H_

//----------------------------------------------------------------------
// Includes
//----------------------------------------------------------------------
#include "MantidAPI/IFileLoader.h"
#include "MantidDataObjects/Histogram1D.h"
#include "MantidAPI/MatrixWorkspace.h"

namespace Mantid
{
namespace DataHandling
{
/**
Loads a workspace from an ascii file. Spectra must be stored in columns.
Properties:
<ul>
<li>Filename - the name of the file to read from.</li>
<li>Workspace - the workspace name that will be created and hold the loaded data.</li>
<li>Separator - the column separation character: comma (default),tab,space,colon,semi-colon.</li>
<li>Unit - the unit to assign to the X axis (default: Energy).</li>
</ul>
@author Keith Brown, ISIS, Placement student from the University of Derby
@date 10/10/13
Copyright &copy; 2007-2010 ISIS Rutherford Appleton Laboratory & NScD Oak Ridge National Laboratory
This file is part of Mantid.
Mantid is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 3 of the License, or
(at your option) any later version.
Mantid is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License
along with this program. If not, see <http://www.gnu.org/licenses/>.
File change history is stored at: <https://github.com/mantidproject/mantid>.
Code Documentation is available at: <http://doxygen.mantidproject.org>
*/
class DLLExport LoadAscii2 :public API::IFileLoader<Kernel::FileDescriptor>
{
public:
/// Default constructor
LoadAscii2();
/// The name of the algorithm
virtual const std::string name() const { return "LoadAscii"; }
/// The version number
virtual int version() const { return 2; }
/// The category
virtual const std::string category() const { return "DataHandling\\Text"; }
/// Returns a confidence value that this algorithm can load a file
virtual int confidence(Kernel::FileDescriptor & descriptor) const;

protected:
/// Read the data from the file
virtual API::Workspace_sptr readData(std::ifstream & file);
/// Return true if the line is to be skipped
bool skipLine(const std::string & line) const;
/// Return true if the line doesn't start with a valid character
bool badLine(const std::string & line) const;
/// check and configure flags and values relating to starting a new spectra
void newSpectra();
/// Check if the file has been found to incosistantly include spectra IDs
void inconsistantIDCheck() const;
/// Split the data into columns.
int splitIntoColumns(std::list<std::string> & columns, const std::string & str) const;
/// Fill the given vector with the data values
void fillInputValues(std::vector<double> &values, const std::list<std::string>& columns) const;
//write the values in the current line to teh end fo teh current spectra
void addToCurrentSpectra(std::list<std::string> & columns);
//check that the nubmer of columns in the current line match the number found previously
void checkLineColumns(const int & cols) const;
//interpret a line that has been deemed valid enough to look at.
void parseLine(const std::string & line, std::list<std::string> & columns, const int & lineNo);
//find the number of collums we should expect from now on
void setcolumns(std::ifstream & file, std::string & line, std::list<std::string> & columns);
//wirte the spectra to the workspace
void writeToWorkspace(API::MatrixWorkspace_sptr & localWorkspace, const size_t & numSpectra) const;
/// The column separator
std::string m_columnSep;

private:
/// Sets documentation strings for this algorithm
virtual void initDocs();
/// Declare properties
void init();
/// Execute the algorithm
void exec();

/// Map the separator options to their string equivalents
std::map<std::string,std::string> m_separatorIndex;
std::string m_comment;
int m_baseCols;
int m_specNo;
int m_lastBins;
int m_curBins;
bool m_spectraStart;
int m_specIDs;
std::vector<DataObjects::Histogram1D> m_spectra;
DataObjects::Histogram1D *m_curSpectra;
};

} // namespace DataHandling
} // namespace Mantid

#endif /* MANTID_DATAHANDLING_LoadAscii2_H_ */
@@ -0,0 +1,97 @@
#ifndef MANTID_DATAHANDLING_SaveAscii2_H_
#define MANTID_DATAHANDLING_SaveAscii2_H_

//----------------------------------------------------------------------
// Includes
//----------------------------------------------------------------------
#include "MantidAPI/Algorithm.h"
#include "MantidAPI/MatrixWorkspace.h"

namespace Mantid
{
namespace DataHandling
{
/** @class SaveAscii2 SaveAscii2.h DataHandling/SaveAscii2.h
Saves a workspace or selected spectra in a coma-separated ascii file. Spectra are saved in columns.
Properties:
<ul>
<li>Filename - the name of the file to write to. </li>
<li>Workspace - the workspace name to be saved.</li>
<li>SpectrumMin - the starting spectrum index to save (optional) </li>
<li>SpectrumMax - the ending spectrum index to save (optional) </li>
<li>SpectrumList - a list of comma-separated spectra indeces to save (optional) </li>
<li>Precision - the numeric precision - the number of significant digits for the saved data (optional) </li>
</ul>
@author Keith Brown, ISIS, Placement student from the University of Derby
@date 10/10/13
Copyright &copy; 2007-9 ISIS Rutherford Appleton Laboratory & NScD Oak Ridge National Laboratory
This file is part of Mantid.
Mantid is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 3 of the License, or
(at your option) any later version.
Mantid is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License
along with this program. If not, see <http://www.gnu.org/licenses/>.
File change history is stored at: <https://github.com/mantidproject/mantid>.
Code Documentation is available at: <http://doxygen.mantidproject.org>
*/
class DLLExport SaveAscii2 : public API::Algorithm
{
public:
/// Default constructor
SaveAscii2();
/// Destructor
~SaveAscii2() {}
/// Algorithm's name for identification overriding a virtual method
virtual const std::string name() const { return "SaveAscii"; }
/// Algorithm's version for identification overriding a virtual method
virtual int version() const { return 2; }
/// Algorithm's category for identification overriding a virtual method
virtual const std::string category() const { return "DataHandling\\Text"; }

private:
/// Sets documentation strings for this algorithm
virtual void initDocs();
/// Overwrites Algorithm method.
void init();
/// Overwrites Algorithm method
void exec();
/**writes a spectra to the file using a workspace ID
@param spectraIndex :: an integer relating to a workspace ID
@param file :: the file writer object
*/
void writeSpectra(const int & spectraIndex, std::ofstream & file);
/**writes a spectra to the file using an iterator
@param spectraItr :: a set<int> iterator pointing to a set of workspace IDs to be saved
@param file :: the file writer object
*/
void writeSpectra(const std::set<int>::const_iterator & spectraItr, std::ofstream & file);
///static reference to the logger class
static Kernel::Logger& g_log;

/// Map the separator options to their string equivalents
std::map<std::string,std::string> m_separatorIndex;

int m_nBins;
std::string m_sep;
bool m_writeDX;
bool m_isHistogram;
API::MatrixWorkspace_const_sptr m_ws;
};
} // namespace DataHandling
} // namespace Mantid

#endif /* MANTID_DATAHANDLING_SaveAscii2_H_ */
4 changes: 2 additions & 2 deletions Code/Mantid/Framework/DataHandling/src/LoadAscii.cpp
Expand Up @@ -74,7 +74,7 @@ namespace Mantid
}
else if(descriptor.isAscii())
{
confidence = 10; // Low so that others may try
confidence = 9; // Low so that others may try but not stopping version 2
}
return confidence;
}
Expand All @@ -86,7 +86,7 @@ namespace Mantid
*/
bool LoadAscii::isAscii(FILE *file)
{
char data[256];
char data[256];
char *pend = &data[fread(data, 1, sizeof(data), file)];
fseek(file,0,SEEK_SET);
/*
Expand Down

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