Autodetect doxygen options. Refs #4360.

Code/Mantid/Framework/Doxygen/Mantid_template.doxyfile

@@ -4,18 +4,19 @@
 # Project related configuration options
 #---------------------------------------------------------------------------
 DOXYFILE_ENCODING      = UTF-8
-PROJECT_NAME           = Mantid
+PROJECT_NAME           = @CMAKE_PROJECT_NAME@
 PROJECT_NUMBER         = 
-OUTPUT_DIRECTORY       = Doc
-CREATE_SUBDIRS         = NO
+OUTPUT_DIRECTORY       = @CMAKE_CURRENT_BINARY_DIR@/../../doxygen
+#                        @PROJECT_BINARY_DIR@/Doc
+CREATE_SUBDIRS         = YES
 OUTPUT_LANGUAGE        = English
 BRIEF_MEMBER_DESC      = YES
 REPEAT_BRIEF           = YES
 ABBREVIATE_BRIEF       = 
 ALWAYS_DETAILED_SEC    = NO
 INLINE_INHERITED_MEMB  = NO
 FULL_PATH_NAMES        = YES
-STRIP_FROM_PATH        = 
+STRIP_FROM_PATH        =  @CMAKE_SOURCE_DIR@
 STRIP_FROM_INC_PATH    = 
 SHORT_NAMES            = NO
 JAVADOC_AUTOBRIEF      = YES
@@ -27,7 +28,7 @@ TAB_SIZE               = 8
 ALIASES                = 
 OPTIMIZE_OUTPUT_FOR_C  = NO
 OPTIMIZE_OUTPUT_JAVA   = NO
-BUILTIN_STL_SUPPORT    = NO
+BUILTIN_STL_SUPPORT    = YES
 CPP_CLI_SUPPORT        = NO
 SIP_SUPPORT            = NO
 DISTRIBUTE_GROUP_DOC   = NO
@@ -36,7 +37,7 @@ TYPEDEF_HIDES_STRUCT   = NO
 #---------------------------------------------------------------------------
 # Build related configuration options
 #---------------------------------------------------------------------------
-EXTRACT_ALL            = NO
+EXTRACT_ALL            = YES
 EXTRACT_PRIVATE        = YES
 EXTRACT_STATIC         = YES
 EXTRACT_LOCAL_CLASSES  = YES
@@ -52,16 +53,17 @@ HIDE_SCOPE_NAMES       = NO
 SHOW_INCLUDE_FILES     = YES
 INLINE_INFO            = YES
 SORT_MEMBER_DOCS       = YES
-SORT_BRIEF_DOCS        = NO
-SORT_BY_SCOPE_NAME     = NO
+SORT_BRIEF_DOCS        = YES
+SORT_BY_SCOPE_NAME     = YES
 GENERATE_TODOLIST      = YES
 GENERATE_TESTLIST      = YES
 GENERATE_BUGLIST       = YES
 GENERATE_DEPRECATEDLIST= YES
 ENABLED_SECTIONS       = 
 MAX_INITIALIZER_LINES  = 30
 SHOW_USED_FILES        = YES
-SHOW_DIRECTORIES       = NO
+SHOW_FILES             = YES
+SHOW_DIRECTORIES       = YES
 FILE_VERSION_FILTER    = 
 #---------------------------------------------------------------------------
 # configuration options related to warning and progress messages
@@ -112,7 +114,8 @@ INPUT = @CMAKE_CURRENT_SOURCE_DIR@/../Algorithms/inc/MantidAlgorithms \
         @CMAKE_CURRENT_SOURCE_DIR@/../TestHelpers/inc/MantidTestHelpers \
         @CMAKE_CURRENT_SOURCE_DIR@/../TestHelpers/src \
         @CMAKE_CURRENT_SOURCE_DIR@/../WorkflowAlgorithms/inc/MantidWorkflowAlgorithms \
-        @CMAKE_CURRENT_SOURCE_DIR@/../WorkflowAlgorithms/src
+        @CMAKE_CURRENT_SOURCE_DIR@/../WorkflowAlgorithms/src \
+
 
 INPUT_ENCODING         = UTF-8
 FILE_PATTERNS          = 
@@ -156,7 +159,7 @@ VERBATIM_HEADERS       = YES
 #---------------------------------------------------------------------------
 # configuration options related to the alphabetical class index
 #---------------------------------------------------------------------------
-ALPHABETICAL_INDEX     = NO
+ALPHABETICAL_INDEX     = YES
 COLS_IN_ALPHA_INDEX    = 5
 IGNORE_PREFIX          = 
 #---------------------------------------------------------------------------
@@ -231,6 +234,14 @@ PERLMOD_LATEX          = NO
 PERLMOD_PRETTY         = YES
 PERLMOD_MAKEVAR_PREFIX = 
 #---------------------------------------------------------------------------
+# Configuration options related to the qtcreator output
+#---------------------------------------------------------------------------
+GENERATE_QHP           = @GENERATE_QHELP@
+QCH_FILE               = "mantid.qch"
+QHP_NAMESPACE          = "mantidproject.org"
+QHP_VIRTUAL_FOLDER     = "mantidQtHelp"
+QHG_LOCATION           = @QHELP_EXECUTABLE@
+#---------------------------------------------------------------------------
 # Configuration options related to the preprocessor   
 #---------------------------------------------------------------------------
 ENABLE_PREPROCESSING   = YES
@@ -256,28 +267,28 @@ PERL_PATH              = /usr/bin/perl
 CLASS_DIAGRAMS         = YES
 MSCGEN_PATH            = 
 HIDE_UNDOC_RELATIONS   = YES
-HAVE_DOT               = NO
+HAVE_DOT               = @HAVE_DOT@
 CLASS_GRAPH            = YES
 COLLABORATION_GRAPH    = YES
 GROUP_GRAPHS           = YES
-UML_LOOK               = NO
-TEMPLATE_RELATIONS     = NO
+UML_LOOK               = YES
+TEMPLATE_RELATIONS     = YES
 INCLUDE_GRAPH          = YES
 INCLUDED_BY_GRAPH      = YES
 CALL_GRAPH             = NO
 CALLER_GRAPH           = NO
-GRAPHICAL_HIERARCHY    = YES
+GRAPHICAL_HIERARCHY    = NO # YES
 DIRECTORY_GRAPH        = YES
 DOT_IMAGE_FORMAT       = png
-DOT_PATH               = 
+DOT_PATH               = @DOXYGEN_DOT_PATH@
 DOTFILE_DIRS           = 
 DOT_GRAPH_MAX_NODES    = 50
-MAX_DOT_GRAPH_DEPTH    = 0
+MAX_DOT_GRAPH_DEPTH    = 2
 DOT_TRANSPARENT        = NO
 DOT_MULTI_TARGETS      = NO
 GENERATE_LEGEND        = YES
 DOT_CLEANUP            = YES
 #---------------------------------------------------------------------------
 # Configuration::additions related to the search engine   
 #---------------------------------------------------------------------------
-SEARCHENGINE           = NO
+SEARCHENGINE           = YES