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Re #11751 Update ALC interface doc
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raquelalvarezbanos committed May 13, 2015
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Expand Up @@ -7,11 +7,59 @@ Muon ALC
Overview
--------

The Muon ALC interface, which is short for Avoided Level Crossing, aims at
handling frequent analysis on e.g. HIFI. It uses simple point-and-click to
analyse a sequence of datasets collected with different parameter values, for
instance different magnetic fields, temperature, etc, and study how this
affects asymmetry. There are currently three steps in the analysis.
The Avoided Level Crossing (ALC) :math:`\mu SR` technique probes the energy levels of a
muoniated radical system, and can be used to elucidate the regiochemistry of
muonium addition, dynamic processes, and reaction kinetics, through measurement
of the muon and proton hyperfine coupling interactions.

Radical systems are formed during muon thermalisation, during which a portion of
the implanted muons are able to capture electrons to form muonium (:math:`\mu+e`). Muonium
adds to centres of unsaturation in a sample (double or triple bonds) to form a
muoniated radical species. The spins of the muon, unpaired electron, and protons
within the sample interact through the isotropic and anisotropic components of
the hyperfine interaction, forming a quantised system, described by a series of
discrete energy levels.

In an ALC experiment the magnetic field is incrementally scanned, recording a
specified number of positron events at each step. At certain fields, the energy
levels in the muon and sample system become nearly degenerate, and are able to
interact through the hyperfine coupling interaction. The spins oscillate between
the two energy states resulting in a dip in the polarisation, observed as a
resonance during the magnetic field scan. The three types of ALC resonance
(referred to as :math:`\Delta 0`, :math:`\Delta 1`, and :math:`\Delta 2` resonances) are characterised by the selection
rule :math:`\Delta M=0, \pm 1, \pm 2`, where :math:`M` is the sum of the mz quantum numbers of the spins
of the muon, electron and proton. Isotropic hyperfine coupling interactions
manifest as :math:`\Delta 0` resonances resulting from muon-nuclear spin flip-flop transitions.
The :math:`\Delta 0` resonance field is dependent on the magnitude of both the muon and proton
hyperfine interaction (:math:`A\mu` and :math:`Ak`, respectively) and can occur in gaseous, liquid,
or solid phase samples. The muon spin flip transition that produces the :math:`\Delta 1`
resonance only arises in the presence of anisotropy. Radical systems possessing
complete anisotropy produce a single broad resonance and systems with axial or
equatorial anisotropy produce an asymmetrical resonance line shape known as a
powder pattern. The :math:`\Delta 2` resonance is also observed in radicals from anisotropic
environments. However, these are rarely observed experimentally due to their
characteristically weak intensity line shapes. The magnitude of the hyperfine
interaction is characteristic of the muon binding site, and can result in an
ALC resonance associated with each of the magnetically equivalent nuclei,
for each muoniated radical isomer.

The magnetic field position, the full width at half height (FWHH), and the
resonance line shape are the important parameters to be extracted from the
ALC spectrum. The field position of a resonance is related to the muon
and/or nuclear hyperfine coupling constant. They often show strong temperature
dependence and can reveal information regarding the structure of the investigated
system. The FWHH of a resonance may indicate any motional dynamics present in the
system, and can also be used to determine muonium addition rates. The anisotropic
environments experienced by radicals in solid samples can produce a variety of
'powder pattern' lineshapes, which are characteristic of the orientation of the
effective hyperfine tensors relative to the magnetic field, and can thus
indicate any reorientational motion present.

In order to extract these parameters accurately from an ALC spectrum it is
necessary to determine a baseline, perform a baseline subtraction and then
fit the peaks. The Muon ALC interface integrates this sequence of
operations hiding the complexity of the underlying algorithms.


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