Merge branch 'master' into 10903_ida_abs_corr_tab

Refs #10903
mantidproject · Apr 1, 2015 · fa0f0a1 · fa0f0a1
2 parents dde9c33 + f3f480a
commit fa0f0a1
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Showing 440 changed files with 4,383 additions and 4,725 deletions.
diff --git a/Code/Mantid/Build/CMake/CommonVatesSetup.cmake b/Code/Mantid/Build/CMake/CommonVatesSetup.cmake
@@ -7,7 +7,6 @@ Framework/API
 Framework/Geometry
 Framework/Kernel
 Framework/DataObjects
-Framework/MDEvents
 )
 
 set ( COMMONVATES_SETUP_DONE TRUE )
diff --git a/Code/Mantid/Framework/API/inc/MantidAPI/IMDNode.h b/Code/Mantid/Framework/API/inc/MantidAPI/IMDNode.h
@@ -53,7 +53,7 @@ class IMDNode {
   */
 
 public:
-  virtual ~IMDNode(){};
+  virtual ~IMDNode(){}
   //---------------- ISAVABLE
   /**Return the pointer to the structure responsible for saving the box on disk
    * if the workspace occupies too much memory */

diff --git a/Code/Mantid/Framework/Algorithms/CMakeLists.txt b/Code/Mantid/Framework/Algorithms/CMakeLists.txt
@@ -43,7 +43,6 @@ set ( SRC_FILES
 	src/ConvertAxisByFormula.cpp
 	src/ConvertEmptyToTof.cpp
 	src/ConvertFromDistribution.cpp
-	src/ConvertMDHistoToMatrixWorkspace.cpp
 	src/ConvertSpectrumAxis.cpp
 	src/ConvertSpectrumAxis2.cpp
 	src/ConvertTableToMatrixWorkspace.cpp
@@ -300,7 +299,6 @@ set ( INC_FILES
 	inc/MantidAlgorithms/ConvertAxisByFormula.h
 	inc/MantidAlgorithms/ConvertEmptyToTof.h
 	inc/MantidAlgorithms/ConvertFromDistribution.h
-	inc/MantidAlgorithms/ConvertMDHistoToMatrixWorkspace.h
 	inc/MantidAlgorithms/ConvertSpectrumAxis.h
 	inc/MantidAlgorithms/ConvertSpectrumAxis2.h
 	inc/MantidAlgorithms/ConvertTableToMatrixWorkspace.h
@@ -568,7 +566,6 @@ set ( TEST_FILES
 	ConvertAxisByFormulaTest.h
 	ConvertEmptyToTofTest.h
 	ConvertFromDistributionTest.h
-	ConvertMDHistoToMatrixWorkspaceTest.h
 	ConvertSpectrumAxis2Test.h
 	ConvertSpectrumAxisTest.h
 	ConvertTableToMatrixWorkspaceTest.h

diff --git a/Code/Mantid/Framework/Algorithms/test/CMakeLists.txt b/Code/Mantid/Framework/Algorithms/test/CMakeLists.txt
@@ -27,19 +27,19 @@ if ( CXXTEST_FOUND )
   configure_file ( PlusMinusTest.in.h      ${CMAKE_CURRENT_SOURCE_DIR}/MinusTest.h)
 
   # Make the rest of the tests
-  include_directories ( ../../CurveFitting/inc ../../DataHandling/inc ../../Nexus/inc ../../TestHelpers/inc ../../MDEvents/inc)
+  include_directories ( ../../CurveFitting/inc ../../DataHandling/inc ../../Nexus/inc ../../TestHelpers/inc )
   # This variable is used within the cxxtest_add_test macro to build these helper classes into the test executable.
   # It will go out of scope at the end of this file so doesn't need un-setting
   set ( TESTHELPER_SRCS ../../TestHelpers/src/TearDownWorld.cpp
                         ../../TestHelpers/src/ComponentCreationHelper.cpp
                         ../../TestHelpers/src/WorkspaceCreationHelper.cpp
                         ../../TestHelpers/src/SANSInstrumentCreationHelper.cpp
-                        ../../TestHelpers/src/MDEventsTestHelper.cpp 
+                        ../../TestHelpers/src/MDEventsTestHelper.cpp
                         ../../TestHelpers/src/ScopedFileHelper.cpp
                         )
   cxxtest_add_test ( AlgorithmsTest ${TEST_FILES} )
-  target_link_libraries ( AlgorithmsTest Algorithms DataHandling MDEvents ${GMOCK_LIBRARIES} )
-  add_dependencies ( AlgorithmsTest Crystal CurveFitting MDAlgorithms )
+  target_link_libraries ( AlgorithmsTest Algorithms DataHandling ${GMOCK_LIBRARIES} )
+  add_dependencies ( AlgorithmsTest Crystal CurveFitting )
   add_dependencies ( FrameworkTests AlgorithmsTest )
   # Test data
   add_dependencies ( AlgorithmsTest StandardTestData )

diff --git a/Code/Mantid/Framework/Algorithms/test/CheckWorkspacesMatchTest.h b/Code/Mantid/Framework/Algorithms/test/CheckWorkspacesMatchTest.h
@@ -8,21 +8,20 @@
 #include "MantidKernel/UnitFactory.h"
 #include "MantidDataObjects/EventWorkspace.h"
 #include "MantidDataObjects/PeaksWorkspace.h"
-#include "MantidMDEvents/MDHistoWorkspace.h"
+#include "MantidDataObjects/MDHistoWorkspace.h"
 #include "MantidTestHelpers/WorkspaceCreationHelper.h"
 #include "MantidTestHelpers/MDEventsTestHelper.h"
 #include "MantidDataObjects/Workspace2D.h"
 #include "MantidAlgorithms/CreatePeaksWorkspace.h"
 #include "MantidAPI/MatrixWorkspace.h"
 #include "MantidGeometry/Instrument.h"
-#include "MantidMDEvents/MDBoxBase.h"
+#include "MantidDataObjects/MDBoxBase.h"
 #include "MantidKernel/V3D.h"
 
 using namespace Mantid::Algorithms;
 using namespace Mantid::API;
 using namespace Mantid::DataObjects;
 using namespace Mantid::Geometry;
-using namespace Mantid::MDEvents;
 
 class CheckWorkspacesMatchTest : public CxxTest::TestSuite
 {
@@ -218,8 +217,8 @@ class CheckWorkspacesMatchTest : public CxxTest::TestSuite
   void testMDEvents_matches()
   {
     if ( !checker.isInitialized() ) checker.initialize();
-    MDEventWorkspace3Lean::sptr mdews1 = MDEventsTestHelper::makeFileBackedMDEW("mdev1", false);
-    MDEventWorkspace3Lean::sptr mdews2 = MDEventsTestHelper::makeFileBackedMDEW("mdev2", false);
+    MDEventWorkspace3Lean::sptr mdews1 = MDEventsTestHelper::makeFakeMDEventWorkspace("mdev1");
+    MDEventWorkspace3Lean::sptr mdews2 = MDEventsTestHelper::makeFakeMDEventWorkspace("mdev2");
     TS_ASSERT_THROWS_NOTHING( checker.setProperty("Workspace1", boost::dynamic_pointer_cast<IMDWorkspace>(mdews1)) );
     TS_ASSERT_THROWS_NOTHING( checker.setProperty("Workspace2", boost::dynamic_pointer_cast<IMDWorkspace>(mdews2)) );
     TS_ASSERT( checker.execute() );

diff --git a/Code/Mantid/Framework/Algorithms/test/CloneWorkspaceTest.h b/Code/Mantid/Framework/Algorithms/test/CloneWorkspaceTest.h
@@ -10,7 +10,7 @@
 #include "MantidTestHelpers/WorkspaceCreationHelper.h"
 #include "MantidTestHelpers/ComponentCreationHelper.h"
 #include "MantidAPI/AnalysisDataService.h"
-#include "MantidMDEvents/MDEventFactory.h"
+#include "MantidDataObjects/MDEventFactory.h"
 #include "MantidTestHelpers/MDEventsTestHelper.h"
 #include "MantidGeometry/Instrument.h"
 #include "MantidDataObjects/PeaksWorkspace.h"
@@ -19,8 +19,7 @@ using namespace Mantid;
 using namespace Mantid::Geometry;
 using namespace Mantid::API;
 using namespace Mantid::DataObjects;
-using namespace Mantid::MDEvents;
-using Mantid::MDEvents::MDEventsTestHelper::makeMDEW;
+using Mantid::DataObjects::MDEventsTestHelper::makeMDEW;
 
 class CloneWorkspaceTest : public CxxTest::TestSuite
 {

diff --git a/Code/Mantid/Framework/Algorithms/test/ConvertEmptyToTofTest.h b/Code/Mantid/Framework/Algorithms/test/ConvertEmptyToTofTest.h
@@ -6,6 +6,7 @@
 
 #include "MantidAlgorithms/ConvertEmptyToTof.h"
 #include "MantidAPI/AnalysisDataService.h"
+#include "MantidAPI/FrameworkManager.h"
 #include "MantidTestHelpers/WorkspaceCreationHelper.h"
 #include "MantidDataObjects/Workspace2D.h"
 #include "MantidGeometry/Instrument/ComponentHelper.h"
@@ -25,6 +26,10 @@ class ConvertEmptyToTofTest: public CxxTest::TestSuite {
     delete suite;
   }
 
+  ConvertEmptyToTofTest() {
+    FrameworkManager::Instance();
+  }
+
   void test_Init() {
     ConvertEmptyToTof alg;
     TS_ASSERT_THROWS_NOTHING(alg.initialize())

diff --git a/Code/Mantid/Framework/Algorithms/test/CopySampleTest.h b/Code/Mantid/Framework/Algorithms/test/CopySampleTest.h
@@ -2,9 +2,6 @@
 #define MANTID_ALGORITHMS_COPYSAMPLETEST_H_
 
 #include <cxxtest/TestSuite.h>
-#include "MantidKernel/Timer.h"
-#include <iostream>
-#include <iomanip>
 
 #include "MantidAlgorithms/CopySample.h"
 #include "MantidDataObjects/WorkspaceSingleValue.h"
@@ -16,9 +13,9 @@
 #include "MantidGeometry/Instrument/ObjComponent.h"
 #include "MantidGeometry/Objects/Object.h"
 
-#include "MantidMDEvents/MDEvent.h"
-#include "MantidMDEvents/MDEventFactory.h"
-#include "MantidMDEvents/MDEventWorkspace.h"
+#include "MantidDataObjects/MDEvent.h"
+#include "MantidDataObjects/MDEventFactory.h"
+#include "MantidDataObjects/MDEventWorkspace.h"
 #include "MantidTestHelpers/ComponentCreationHelper.h"
 
 using namespace Mantid;
@@ -27,7 +24,6 @@ using namespace Mantid::API;
 using namespace Mantid::DataObjects;
 using namespace Mantid::Geometry;
 using namespace Mantid::Kernel;
-using namespace Mantid::MDEvents;
 
 class CopySampleTest : public CxxTest::TestSuite
 {

diff --git a/Code/Mantid/Framework/Algorithms/test/CreateSampleWorkspaceTest.h b/Code/Mantid/Framework/Algorithms/test/CreateSampleWorkspaceTest.h
@@ -3,6 +3,7 @@
 
 #include <cxxtest/TestSuite.h>
 
+#include "MantidAPI/FrameworkManager.h"
 #include "MantidGeometry/Instrument.h"
 #include "MantidGeometry/IComponent.h"
 #include "MantidGeometry/Instrument/ReferenceFrame.h"
@@ -25,6 +26,9 @@ class CreateSampleWorkspaceTest : public CxxTest::TestSuite
   static CreateSampleWorkspaceTest *createSuite() { return new CreateSampleWorkspaceTest(); }
   static void destroySuite( CreateSampleWorkspaceTest *suite ) { delete suite; }
 
+  CreateSampleWorkspaceTest() {
+    FrameworkManager::Instance();
+  }
 
   void test_Init()
   {

diff --git a/Code/Mantid/Framework/Algorithms/test/ElasticWindowTest.h b/Code/Mantid/Framework/Algorithms/test/ElasticWindowTest.h
@@ -5,7 +5,7 @@
 
 #include <iostream>
 #include <iomanip>
-
+#include "MantidAPI/FrameworkManager.h"
 #include "MantidKernel/System.h"
 
 #include "MantidAlgorithms/ConvertUnits.h"
@@ -24,6 +24,14 @@ using namespace Mantid::Kernel::Units;
 class ElasticWindowTest : public CxxTest::TestSuite
 {
 public:
+  // This pair of boilerplate methods prevent the suite being created statically
+  // This means the constructor isn't called when running other tests
+  static ElasticWindowTest *createSuite() { return new ElasticWindowTest(); }
+  static void destroySuite( ElasticWindowTest *suite ) { delete suite; }
+
+  ElasticWindowTest() {
+    FrameworkManager::Instance();
+  }
 
   void setUp()
   {

diff --git a/Code/Mantid/Framework/Algorithms/test/ReflectometryReductionOneTest.h b/Code/Mantid/Framework/Algorithms/test/ReflectometryReductionOneTest.h
@@ -5,6 +5,7 @@
 #include <algorithm>
 #include "MantidAlgorithms/ReflectometryReductionOne.h"
 #include "MantidAPI/AlgorithmManager.h"
+#include "MantidAPI/FrameworkManager.h"
 #include "MantidAPI/MatrixWorkspace.h"
 #include "MantidTestHelpers/WorkspaceCreationHelper.h"
 #include "MantidGeometry/Instrument/ReferenceFrame.h"
@@ -36,6 +37,7 @@ class ReflectometryReductionOneTest: public CxxTest::TestSuite
 
   ReflectometryReductionOneTest()
   {
+    FrameworkManager::Instance();
     m_tinyReflWS = create2DWorkspaceWithReflectometryInstrument();
   }
 

diff --git a/Code/Mantid/Framework/Algorithms/test/RemoveExpDecayTest.h b/Code/Mantid/Framework/Algorithms/test/RemoveExpDecayTest.h
@@ -2,7 +2,7 @@
 #define MUONREMOVEEXPDECAYTEST_H_
 
 #include <cxxtest/TestSuite.h>
-
+#include "MantidAPI/FrameworkManager.h"
 #include "MantidAlgorithms/RemoveExpDecay.h"
 #include "MantidTestHelpers/WorkspaceCreationHelper.h"
 
@@ -14,6 +14,15 @@ const std::string outputName = "MuonRemoveExpDecay_Output";
 class RemoveExpDecayTest : public CxxTest::TestSuite
 {
 public:
+  // This pair of boilerplate methods prevent the suite being created statically
+  // This means the constructor isn't called when running other tests
+  static RemoveExpDecayTest *createSuite() { return new RemoveExpDecayTest(); }
+  static void destroySuite( RemoveExpDecayTest *suite ) { delete suite; }
+
+  RemoveExpDecayTest() {
+    FrameworkManager::Instance();
+  }
+
 
   void testInit()
   {

diff --git a/Code/Mantid/Framework/Algorithms/test/StripPeaksTest.h b/Code/Mantid/Framework/Algorithms/test/StripPeaksTest.h
@@ -6,6 +6,7 @@
 
 #include "MantidAlgorithms/StripPeaks.h"
 #include "MantidAPI/AnalysisDataService.h"
+#include "MantidAPI/FrameworkManager.h"
 #include "MantidKernel/UnitFactory.h"
 
 using namespace Mantid::API;
@@ -20,6 +21,7 @@ class StripPeaksTest : public CxxTest::TestSuite
 
   StripPeaksTest()
   {
+    FrameworkManager::Instance();
     MatrixWorkspace_sptr WS = WorkspaceCreationHelper::Create2DWorkspaceBinned(2,200,0.5,0.02);
     WS->getAxis(0)->unit() = Mantid::Kernel::UnitFactory::Instance().create("dSpacing");
 

diff --git a/Code/Mantid/Framework/Algorithms/test/WienerSmoothTest.h b/Code/Mantid/Framework/Algorithms/test/WienerSmoothTest.h
@@ -4,6 +4,7 @@
 #include <cxxtest/TestSuite.h>
 
 #include "MantidAlgorithms/WienerSmooth.h"
+#include "MantidAPI/FrameworkManager.h"
 #include "MantidAPI/WorkspaceFactory.h"
 
 #include <algorithm>
@@ -19,6 +20,10 @@ class WienerSmoothTest : public CxxTest::TestSuite
   static WienerSmoothTest *createSuite() { return new WienerSmoothTest(); }
   static void destroySuite( WienerSmoothTest *suite ) { delete suite; }
 
+  WienerSmoothTest() {
+    FrameworkManager::Instance();
+  }
+
 
   void test_Init()
   {
@@ -261,4 +266,4 @@ class WienerSmoothTest : public CxxTest::TestSuite
 };
 
 
-#endif /* MANTID_ALGORITHMS_WIENERSMOOTHTEST_H_ */
+#endif /* MANTID_ALGORITHMS_WIENERSMOOTHTEST_H_ */
diff --git a/Code/Mantid/Framework/CMakeLists.txt b/Code/Mantid/Framework/CMakeLists.txt
@@ -125,7 +125,6 @@ if ( CXXTEST_FOUND )
 endif ()
 
 add_subdirectory (MDAlgorithms)
-add_subdirectory (MDEvents)
 add_subdirectory (Doxygen)
 add_subdirectory (ScriptRepository)
 add_subdirectory (ISISLiveData)
@@ -137,7 +136,7 @@ add_subdirectory (ISISLiveData)
 set ( FRAMEWORK_LIBS Kernel Geometry API PythonKernelModule
                      PythonGeometryModule PythonAPIModule DataObjects
                      DataHandling Nexus Algorithms CurveFitting ICat
-                     Crystal MDAlgorithms MDEvents WorkflowAlgorithms
+                     Crystal MDAlgorithms WorkflowAlgorithms
                      LiveData ISISLiveData RemoteAlgorithms SINQ
 )
 

diff --git a/Code/Mantid/Framework/Crystal/test/CMakeLists.txt b/Code/Mantid/Framework/Crystal/test/CMakeLists.txt
@@ -1,15 +1,15 @@
 if ( CXXTEST_FOUND )
   include_directories ( SYSTEM ${CXXTEST_INCLUDE_DIR} ${GMOCK_INCLUDE_DIR} ${GTEST_INCLUDE_DIR} )
 
-  include_directories ( ../../DataHandling/inc ../../MDEvents/inc ../../TestHelpers/inc )
+  include_directories ( ../../DataHandling/inc ../../TestHelpers/inc )
   # This variable is used within the cxxtest_add_test macro to build these helper classes into the test executable.
   # It will go out of scope at the end of this file so doesn't need un-setting
   set ( TESTHELPER_SRCS ../../TestHelpers/src/TearDownWorld.cpp
                         ../../TestHelpers/src/ComponentCreationHelper.cpp
                         ../../TestHelpers/src/WorkspaceCreationHelper.cpp
                         ../../TestHelpers/src/MDEventsTestHelper.cpp )
   cxxtest_add_test ( CrystalTest ${TEST_FILES} )
-  target_link_libraries ( CrystalTest Crystal DataHandling MDEvents MDAlgorithms ${GMOCK_LIBRARIES} ${GTEST_LIBRARIES})
+  target_link_libraries ( CrystalTest Crystal DataHandling MDAlgorithms ${GMOCK_LIBRARIES} ${GTEST_LIBRARIES})
   add_dependencies ( CrystalTest Algorithms CurveFitting )
   add_dependencies ( FrameworkTests CrystalTest )
   # Test data

diff --git a/Code/Mantid/Framework/Crystal/test/ClearUBTest.h b/Code/Mantid/Framework/Crystal/test/ClearUBTest.h
@@ -10,8 +10,8 @@
 #include "MantidDataObjects/TableWorkspace.h"
 
 using Mantid::Crystal::ClearUB;
-using namespace Mantid::MDEvents;
 using namespace Mantid::API;
+using namespace Mantid::DataObjects;
 using namespace Mantid::Geometry;
 
 class ClearUBTest : public CxxTest::TestSuite

diff --git a/Code/Mantid/Framework/Crystal/test/ClusterIntegrationBaseTest.h b/Code/Mantid/Framework/Crystal/test/ClusterIntegrationBaseTest.h
@@ -12,7 +12,6 @@
 #include "MantidTestHelpers/MDEventsTestHelper.h"
 #include "MantidTestHelpers/WorkspaceCreationHelper.h"
 #include "MantidTestHelpers/ComponentCreationHelper.h"
-#include "MantidAPI/FrameworkManager.h"
 #include "MantidAPI/AlgorithmManager.h"
 #include "MantidAPI/Workspace.h"
 #include "MantidKernel/V3D.h"
@@ -24,9 +23,8 @@
 
 using namespace Mantid::API;
 using namespace Mantid::Kernel;
-using namespace Mantid::MDEvents;
-using namespace Mantid::Geometry;
 using namespace Mantid::DataObjects;
+using namespace Mantid::Geometry;
 
 // Helper typedef
 typedef boost::tuple<IMDHistoWorkspace_sptr, IPeaksWorkspace_sptr> MDHistoPeaksWSTuple;

diff --git a/Code/Mantid/Framework/Crystal/test/ClusterTest.h b/Code/Mantid/Framework/Crystal/test/ClusterTest.h
@@ -8,7 +8,7 @@
 
 using Mantid::Crystal::Cluster;
 using namespace Mantid::API;
-using namespace Mantid::MDEvents;
+using namespace Mantid::DataObjects;
 
 class ClusterTest : public CxxTest::TestSuite
 {

diff --git a/Code/Mantid/Framework/Crystal/test/ConnectedComponentLabelingTest.h b/Code/Mantid/Framework/Crystal/test/ConnectedComponentLabelingTest.h
@@ -20,7 +20,7 @@
 
 using namespace Mantid::Crystal;
 using namespace Mantid::API;
-using namespace Mantid::MDEvents;
+using namespace Mantid::DataObjects;
 using namespace testing;
 
 namespace