Running from docker

From any directory in your computer:

# download the image from dockerhub
docker pull manulera/ontologyviewer
# Start the container
docker run -d --name ontologyviewercontainer -p 5000:5000 manulera/ontologyviewer

Now you should be able to use the application at http://localhost:5000/. First time you try to open the URL it may take a bit longer, since it is loading the ontologies. Next times it should be fast.

When you are done, go to the Docker user interface:

• Go to containers:
  • Stop ontologyviewercontainer
  • Delete ontologyviewercontainer
• Go to images
  • Delete manulera/ontologyviewer

What you can do so far

• You can introduce the term IDs for FYPO, comma separated, then click Submit.This will return the tree.
• You can copy the code to paste the tree in a github ticket by clicking on Copy mermaid code.
• Tickboxes allow minimal configuration.

What I did not figure out how to do

• For now it only gets is_a relationship (I guess good enough for now in FYPO), but it would be good to access other relationships as well. I can see how to access the other relationships towards the parent, but not towards the children. I have made this ticket asking: althonos/pronto#177
• I don't know where the logical definitions are stored in the FYPO repository. I would have liked to also retrieve multiple logical definitions so it would be easier to compare them than going back and forward on protege. Something to check in the future.

Running locally

export FLASK_ENV=development
poetry run flask run

To build the image:

docker build -t manulera/ontologyviewer .

# For dockerhub:
docker push manulera/ontologyviewer
# For building
docker run -d --name ontologyviewercontainer -p 5000:5000 manulera/ontologyviewer