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merge
command returned nothing when input msdfs
had no `confidenc…
…e` column (#350) * `merge` returned nothing wihtout confidence * `np.NaN` => 0.0 * added flag to indicate confidence column status * default = False * removed unnecessary flag return * Update sssom/util.py Co-authored-by: Nico Matentzoglu <nicolas.matentzoglu@gmail.com> * Update sssom/util.py Co-authored-by: Nico Matentzoglu <nicolas.matentzoglu@gmail.com> * with and without reconcile tests --------- Co-authored-by: Nico Matentzoglu <nicolas.matentzoglu@gmail.com>
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Original file line number | Diff line number | Diff line change |
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# curie_map: | ||
# UBERON: http://purl.obolibrary.org/obo/UBERON_ | ||
# ZFS: http://purl.obolibrary.org/obo/ZFS_ | ||
# oio: http://www.geneontology.org/formats/oboInOwl# | ||
# owl: http://www.w3.org/2002/07/owl# | ||
# rdf: http://www.w3.org/1999/02/22-rdf-syntax-ns# | ||
# rdfs: http://www.w3.org/2000/01/rdf-schema# | ||
# semapv: https://w3id.org/semapv/ | ||
# skos: http://www.w3.org/2004/02/skos/core# | ||
# sssom: https://w3id.org/sssom/ | ||
# license: https://w3id.org/sssom/license/unspecified | ||
# mapping_set_id: https://w3id.org/sssom/mappings/72debc9d-ca69-45e8-b46d-aef8361bedf2 | ||
# object_source: ZFS | ||
# subject_source: UBERON | ||
subject_id subject_label predicate_id object_id mapping_justification subject_source object_source | ||
UBERON:0000069 larval stage oio:hasDbXref ZFS:0000048 semapv:UnspecifiedMatching UBERON ZFS | ||
UBERON:0000105 life cycle stage oio:hasDbXref ZFS:0100000 semapv:UnspecifiedMatching UBERON ZFS | ||
UBERON:0000105 life cycle stage oio:hasDbXref ZFS:0000000 semapv:UnspecifiedMatching UBERON ZFS |
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Original file line number | Diff line number | Diff line change |
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# curie_map: | ||
# UBERON: http://purl.obolibrary.org/obo/UBERON_ | ||
# WBls: http://purl.obolibrary.org/obo/WBls_ | ||
# oio: http://www.geneontology.org/formats/oboInOwl# | ||
# owl: http://www.w3.org/2002/07/owl# | ||
# rdf: http://www.w3.org/1999/02/22-rdf-syntax-ns# | ||
# rdfs: http://www.w3.org/2000/01/rdf-schema# | ||
# semapv: https://w3id.org/semapv/ | ||
# skos: http://www.w3.org/2004/02/skos/core# | ||
# sssom: https://w3id.org/sssom/ | ||
# license: https://w3id.org/sssom/license/unspecified | ||
# mapping_set_id: https://w3id.org/sssom/mappings/c5e357f5-86df-4aaa-a30e-8a23ad523ab2 | ||
# object_source: WBls | ||
# subject_source: UBERON | ||
subject_id subject_label predicate_id object_id mapping_justification subject_source object_source | ||
UBERON:0000066 fully formed stage oio:hasDbXref WBls:0000041 semapv:UnspecifiedMatching UBERON WBls | ||
UBERON:0000068 embryo stage oio:hasDbXref WBls:0000003 semapv:UnspecifiedMatching UBERON WBls | ||
UBERON:0000068 embryo stage oio:hasDbXref WBls:0000102 semapv:UnspecifiedMatching UBERON WBls | ||
UBERON:0000068 embryo stage oio:hasDbXref WBls:0000092 semapv:UnspecifiedMatching UBERON WBls |
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