Bug?: --mapping-predicate-filter only accepting URI, not CURIE

[joeflack4]

Overview

I tried --mapping-predicate-filter omoprel:Mapped_from and it did not work, but --mapping-predicate-filter https://w3id.org/cpont/omop/relations/Mapped_from did.

Details

Command

Syntax: f'sssom parse {obograph_path} -I obographs-json -o {outpath_sssom} -m {metadata_path}'
Actual: sssom parse /Users/joeflack4/projects/owl-on-fhir/test/output/test_defaults/RxNorm.owl.obographs.json -I obographs-json -o /Users/joeflack4/projects/owl-on-fhir/test/output/test_defaults/RxNorm.sssom.tsv -m /Users/joeflack4/projects/owl-on-fhir/test/output/test_defaults/temp-metadata.sssom.yml

Inputs

1. Obographs JSON: RxNorm.owl.obographs.json
2. SSSOM Metadata YML: temp-metadata.sssom.yml

curie_map:
  OMOP: https://athena.ohdsi.org/search-terms/terms/
  omoprel: https://w3id.org/cpont/omop/relations/

Additional details

Context:

• Bug?: Obographs parser: metadata not utilized; getting 0 mappings #456

[matentzn]

I think this is a good idea. With @cthoyt huge improvements on handling prefixmaps you could simply use the msdf.converter right after it is created to expand(passthru=true) all the values provided! One line of code if I think of this correctly.