Add poetry.lock back to versioning and trying minimal dependency

[hrshdhgd]

• Added poetry.lock back to version control

• Removed pinning of poetry version in GitHub Actions

• Pruned dependency list to the minimal required one based on the dependencies that already bring in other packages that are needed.

• figure out why the error was occurring:

  • So linkml-runtime has a dependency on prefixcommons which has a dependency on pytest-logging. This package (pytest-logging) is causing issues with the windows instance within GitHub Actions.
  • I do not know why this is not happening in any of the other projects we have.
  • The fix in qc.yml is :

    poetry run pip wheel --use-pep517 "pytest-logging (==2015.11.4)"
  

  before poetry install

• Another issue was with Windows environment not detecting poetry as a command in spite of being installed.

  • Reason: poetry path was not automatically being added to environment variables when it is invoked using an reusable gh-action ( snok/install-poetry@v1).
  • Fix:

  - name: Windows specific step.
          if: matrix.os == 'windows-latest'
          run: echo "${HOME}/.local/bin" | Out-File -FilePath $env:GITHUB_PATH -Encoding utf8 -Append
  
  

• pyparsing is not really used in the project as far as I know. It is also causing errors in GH Actions. So removing it

Note: poetry is still pinned to version 1.3.2 as before.

[matentzn]

Looks good to me!