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Minor fix to the “overview” document regarding the TSV format #284

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merged 2 commits into from
Jun 11, 2023

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gouttegd
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Partially addresses [#283]

  • docs/ have been added/updated if necessary
  • make test has been run locally (N/A; documentation change only)
  • tests have been added/updated (N/A; documentation change only)
  • CHANGELOG.md has been updated. (N/A; documentation change only)

This PR fixes point 1. and 2. described in #283 (disallowing the use of curie_map as a link to an external curie map and fixing a discrepancy in the recommended file naming convention for the external metadata file).

Remove the bit in the specification that suggested the `curie_map`
parameter in the YAML metadata of a mapping set could be a link to an
external curie map. `curie_map` should only be used to provide an
embedded curie map. It is unclear whether an external curie map should
be allowed at all, but if it is, it should be specified using a distinct
parameter.
The recommendation is that the external metadata file, when present,
should have the extension `.sssom.yml` (not `-meta.yml`).
@gouttegd gouttegd requested a review from matentzn June 10, 2023 17:31
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Perfect, thanks!

@matentzn matentzn merged commit 295678f into mapping-commons:master Jun 11, 2023
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@gouttegd gouttegd deleted the fix-overview-tsv branch June 11, 2023 13:48
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2 participants