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Currently, an adapter such as -g ^NNACGT will match a read that starts with NTACGT with one mismatch since the first N in the read is counted as a mismatch.
The is unexpected. Instead, all N wildcards in an adapter sequence should match whatever character is in the read at the corresponding position. (Unless --no-match-adapter-wildcards/-N has been used.)
The text was updated successfully, but these errors were encountered:
Currently, an adapter such as
-g ^NNACGT
will match a read that starts withNTACGT
with one mismatch since the firstN
in the read is counted as a mismatch.The is unexpected. Instead, all
N
wildcards in an adapter sequence should match whatever character is in the read at the corresponding position. (Unless--no-match-adapter-wildcards
/-N
has been used.)The text was updated successfully, but these errors were encountered: