Donders Institute Diffusion Imaging (DIDI) toolkit

Add the didi path to your Matlab path (without the subdirectories) and run the main function:

dd_basicproc

Requirements:

* SPM12
* Diffusion toolbox (http://sourceforge.net/projects/spmtools)
* BET (http://www.fmrib.ox.ac.uk/fsl/bet)
* Distributed computing toolbox (optional). See:
  http://fieldtrip.fcdonders.nl/development/qsub

Name		Name	Last commit message	Last commit date
Latest commit History 22 Commits
DWIDenoisingPackage_r01_pcode		DWIDenoisingPackage_r01_pcode
minFunc_2012		minFunc_2012
LICENSE		LICENSE
README.md		README.md
dd_basicproc.fig		dd_basicproc.fig
dd_basicproc.m		dd_basicproc.m
dd_basicproc_cleanup.m		dd_basicproc_cleanup.m
dd_basicproc_convert2nifti.m		dd_basicproc_convert2nifti.m
dd_basicproc_denoising.m		dd_basicproc_denoising.m
dd_basicproc_estdtensor.m		dd_basicproc_estdtensor.m
dd_basicproc_exportdwi.m		dd_basicproc_exportdwi.m
dd_basicproc_getmask.m		dd_basicproc_getmask.m
dd_basicproc_getsnr.m		dd_basicproc_getsnr.m
dd_basicproc_normtdimgs.m		dd_basicproc_normtdimgs.m
dd_basicproc_plotparameters.m		dd_basicproc_plotparameters.m
dd_basicproc_realign.m		dd_basicproc_realign.m
dd_basicproc_realignpar.m		dd_basicproc_realignpar.m
dd_basicproc_warp.m		dd_basicproc_warp.m
dd_bids.m		dd_bids.m
dd_bvalvec2mat.m		dd_bvalvec2mat.m
dd_disp_grad.m		dd_disp_grad.m
dd_eigvalcorr.m		dd_eigvalcorr.m
dd_getmeanmask.m		dd_getmeanmask.m
dd_group_realign.m		dd_group_realign.m
dd_indices2.m		dd_indices2.m
dd_initcnode.m		dd_initcnode.m
dd_outliers.m		dd_outliers.m
dd_patch.fig		dd_patch.fig
dd_patch.m		dd_patch.m
dd_patch_wip_pfpaper.m		dd_patch_wip_pfpaper.m
dd_roimean.m		dd_roimean.m
dd_rotategradients.m		dd_rotategradients.m
dd_snr.m		dd_snr.m
dd_wregress.m		dd_wregress.m
df_get_sampling_points.c		df_get_sampling_points.c
df_get_sampling_points.c.old		df_get_sampling_points.c.old
df_get_sampling_points.mexa64		df_get_sampling_points.mexa64
df_reslice.m		df_reslice.m
df_transf_coord.m		df_transf_coord.m
df_unwarp.m		df_unwarp.m
df_unwarp_graphwip.m		df_unwarp_graphwip.m
dicom_sort.m		dicom_sort.m
dicominfodti.m		dicominfodti.m
gendiffvecfile.m		gendiffvecfile.m
mask2dti.m		mask2dti.m
mex_pewarpcost_regularised.c		mex_pewarpcost_regularised.c
mex_pewarpcost_regularised.mexa64		mex_pewarpcost_regularised.mexa64
mywarning.m		mywarning.m
peunwarp_estimate.m		peunwarp_estimate.m
peunwarp_fminunc_regularised.m		peunwarp_fminunc_regularised.m
peunwarp_write.m		peunwarp_write.m
roilabel.m		roilabel.m
roilabel2.m		roilabel2.m
smoothn.m		smoothn.m
spm_dicom_convert_mz.m		spm_dicom_convert_mz.m
spm_dicom_convert_mz2.m		spm_dicom_convert_mz2.m
system_dccn.m		system_dccn.m
zdilate2sp.c		zdilate2sp.c
zdilate2sp.mexa64		zdilate2sp.mexa64
zerode2sp.c		zerode2sp.c
zerode2sp.mexa64		zerode2sp.mexa64
zmedfilt2sp.cpp		zmedfilt2sp.cpp
zmedfilt2sp.mexa64		zmedfilt2sp.mexa64

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marcelzwiers/didi

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Donders Institute Diffusion Imaging (DIDI) toolkit

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