Unable to locate files

[kalyan-iiitbh]

Upon executing the provided bash script, getting the below errors. Kindly help

artitioning graph nodes across compute nodes... Growing communities... Traceback (most recent call last): File "main4_sample.py", line 148, in <module> main() File "main4_sample.py", line 121, in main with open(seed_nodes_F, 'rb') as f: FileNotFoundError: [Errno 2] No such file or directory: 'yeast/all_nodes_known_comp_n_pts_1/res_seed_nodes0' Merging very similar communities... Traceback (most recent call last): File "main5_postprocess.py", line 187, in <module> main() File "main5_postprocess.py", line 157, in main with open(out_comp_nm_sample + "_pred_comp_list" + str(i), 'rb') as f: FileNotFoundError: [Errno 2] No such file or directory: 'yeast/results_conn_tapcliques/res_pred_comp_list0' Comparing predicted and known communities... Traceback (most recent call last): File "main6_eval.py", line 307, in <module> main() File "main6_eval.py", line 145, in main with open(inputs['dir_nm'] + inputs["out_comp_nm"] + '_pred.out', "r") as fn: FileNotFoundError: [Errno 2] No such file or directory: 'yeast/results_conn_tapcliques/res_pred.out'

[meghanapalukuri]

The missing file res_seed_nodes0 should be constructed by the previous step in the example bash script provided in the README: echo Partitioning graph nodes across compute nodes... python3 main3_partition_search_seeds.py --input_file_name $input_file_name --out_dir_name $out_dir_name_meth --search_method $meth Please check and debug accordingly.

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On Sat, Apr 16, 2022, 8:20 AM kalyan-iiitbh ***@***.***> wrote: Upon executing the provided bash script, getting the below errors. Kindly help artitioning graph nodes across compute nodes... Growing communities... Traceback (most recent call last): File "main4_sample.py", line 148, in <module> main() File "main4_sample.py", line 121, in main with open(seed_nodes_F, 'rb') as f: FileNotFoundError: [Errno 2] No such file or directory: 'yeast/all_nodes_known_comp_n_pts_1/res_seed_nodes0' Merging very similar communities... Traceback (most recent call last): File "main5_postprocess.py", line 187, in <module> main() File "main5_postprocess.py", line 157, in main with open(out_comp_nm_sample + "_pred_comp_list" + str(i), 'rb') as f: FileNotFoundError: [Errno 2] No such file or directory: 'yeast/results_conn_tapcliques/res_pred_comp_list0' Comparing predicted and known communities... Traceback (most recent call last): File "main6_eval.py", line 307, in <module> main() File "main6_eval.py", line 145, in main with open(inputs['dir_nm'] + inputs["out_comp_nm"] + '_pred.out', "r") as fn: FileNotFoundError: [Errno 2] No such file or directory: 'yeast/results_conn_tapcliques/res_pred.out' — Reply to this email directly, view it on GitHub <#1>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/ADX7XGKC4XFQNWXHRJA3GZDVFK5CLANCNFSM5TSL7WWA> . You are receiving this because you are subscribed to this thread.Message ID: ***@***.***>