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susCovONT v1.0.0
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@marithetland marithetland released this 22 Mar 07:09
· 45 commits to main since this release
v1.0.0
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Learn about vigilant mode.

The first release of susCovONT!

  • In summary, this tool takes as input ONT sequencing data and outputs consensus fastas (using artic minion), qc (pct coverage ++), pangolin and nextclade lineages
  • QC thresholds: >97% of bases must be confidently called (>=20X per base) and there must be a stretch of >10Kb seq without Ns
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